Access post-processing data

[Min Ya]

Hi,

I'm wondering is there a way to access the post-processing data? I have the TPM data in the results folder but I'm also very interested in having the list of genes after filtering and TMM normalization.

Thank you for developing this platform!

Best,

Ya

[wenbin guo]

Hi Ya,

Are you able do R code? In the data folder, there is an R object called intermediate_data.RData object. This is a list object. You can find a element named target_high, which includes all the genes and transcripts after filters. An alternative but indirect way is in the result folder, you will have a table ‘DE gene testing statistics.csv’ and a table 'DE transcripts testing statistics.csv'. These tables include all the genes and transcripts that passed for DE analysis, the low expressed are not included in these table. You can get the gene and transcript list there.