HiC-spector

[Мария Боровкова]

Hello everyone. Could you help me? running the HiC-spector (https://github.com/gersteinlab/HiC-spector)code run_reproducibility_v2.py

I run the code like this:

python run_reproducibility_v2.py -f SRR5206657.hic SRR5206658.hic chr2R 5000 ERROR:

Traceback (most recent call last):

File "run_reproducibility_v2.py", line 205, in

main()

File "run_reproducibility_v2.py", line 189, in main

M1, M2=Parse_matrix_hic(sys.argv[2],sys.argv[3],sys.argv[4],int(sys.argv[5]))

File "run_reproducibility_v2.py", line 83, in Parse_matrix_hic

Table1=straw.straw("NONE",file1, chrn, chrn,"BP",resolution)

TypeError: straw(): incompatible function arguments. The following argument types are supported:

1. (arg0: str, arg1: str, arg2: str, arg3: str, arg4: str, arg5: str, arg6: typing.SupportsInt) -> list[contactRecord]

Invoked with: 'NONE', 'SRR5206657.hic', 'chr2R', 'chr2R', 'BP', 5000