Getting Chromosome Error - Eigenvector tool

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apoorva goyal

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Jan 19, 2024, 7:41:05 PM1/19/24

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I tried running the Eigenvector tool using JAVA using the code mentioned on GitHub https://github.com/aidenlab/juicer/wiki/Eigenvector

java -jar /apps/juicer/2.0/juicer/scripts/juicer_tools eigenvector KR inter_30.hic X BP 1000000

And this the error I am getting

WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.WARN [2024-01-19T11:59:09,921] [Globals.java:138] [main] Development mode is enabledUnknown chromosome: X

Can Somebody please explain what is going on or if there is something wrong in the code?

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