"juicer_tools hiccups --help" output:
"Usage: juicer_tools hiccups [-m matrixSize] [-k normalization (NONE/VC/VC_SQRT/KR)] [-c chromosome(s)] [-r resolution(s)] [-f fdr] [-p peak width] [-i window] [-t thresholds] [-d centroid distances] [--ignore_sparsity]<hicFile> <outputDirectory> [specified_loop_list]"
and when I try to run my file through with
"juicer_tools hiccups --cpu --threads 4 --ignore_sparsity xx.hic /output/path"
I am receving this error:
"Exception in thread "main" jargs.gnu.CmdLineParser$UnknownOptionException: Unknown option '--cpu'
at jargs.gnu.CmdLineParser.parse(CmdLineParser.java:475)
at jargs.gnu.CmdLineParser.parse(CmdLineParser.java:426)
at juicebox.tools.HiCTools.main(HiCTools.java:63)"
Any help would be appreciated!