x pattern on HiC map

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Alejandra Camargo

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Jul 10, 2025, 6:56:50 PMJul 10

to 3D Genomics

Hello,

I am new to HiC manual curation and I see this cross pattern in one of the scaffolds. I am unsure about how to interpret it or fix. I would appreciate any insights.

Thank you.

Alejandra Camargo

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Jul 10, 2025, 6:57:13 PMJul 10

to 3D Genomics

Hello,

I am new to HiC and assembly manual curation. I see this cross pattern in one of the scaffolds and I am unsure about how to interpret or fix it. Any insight would be appreciated.

Thank you. hic 2025-07-10 at 4.01.27 PM.png

許博程

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Jul 24, 2025, 9:02:08 PMJul 24

to 3D Genomics

Hello,

In my opinion, I believe it is an inversion of duplication.

Alejandra Camargo 在 2025年7月11日星期五清晨6:57:13 [UTC+8] 的信中寫道：

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