juicer APA problem:APA diagram is blank

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XiaoJie Wang

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Jan 13, 2023, 6:45:48 AM1/13/23
to 3D Genomics
Hello,
Today, I encountered some problems when drawing the APA diagram. No matter how I draw the APA diagram, the diagram is blank. Although I changed many data sets, I still have this problem.
APA.png
This is my run script and console output:

 java -Xms8g -jar juicer_tools.jar apa HiC/escs.hic loop/escs_fgfr1.bedpe results/escs_fgfr1

WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.

WARN [2023-01-13T17:14:31,988]  [Globals.java:138] [main]  Development mode is enabled

Reading file: HiC/escs.hic

Using 1 CPU thread(s) for primary task

Processing APA for resolution 25000

4% 9% 13% Exporting APA results...

Processing APA for resolution 10000

4% 9% 13% 18% 22% 27% 31% 36% 40% 45% 50% 54% 59% 63% 68% 72% 77% 81% 86% Exporting APA results...

Processing APA for resolution 5000

4% 9% 13% 18% 22% 27% 31% 36% 40% 45% 50% 54% 59% 63% 68% 72% 77% 81% 86% Exporting APA results...

APA complete


And this is the loop file I use:

图片.png

As for the HiC file I used, I downloaded the standard. hic file from the database, which should be correct.

I would like to ask why my APA pictures are blank. I hope to get your reply. I will be grateful.

Thanks!


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