hiccupsdiff: how to get local expected enrichment for a given loop list

[ytliu...@gmail.com]

Hi Dear group,

I was running hiccupsdiff to find different loops for two loop lists. And I want to know the detail of hiccupsdiff: how does it check the diff loop? Also, I was wondering if there is any possible that I can get local expected enrichment value for a given loop list?

Thanks!

Yoland

[Neva Durand]

Hello,

Please have a look at the documentation:

https://github.com/theaidenlab/juicer/wiki/HiCCUPSDiff

https://github.com/theaidenlab/juicer/wiki/HiCCUPS

The second link explains how to send in a loop list.

Best

Neva

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Neva Cherniavsky Durand, Ph.D.

Staff Scientist, Aiden Lab

www.aidenlab.org