Hi Neva,
I just tried to run eigenvector (Juicer Tools Version 1.5.3) and the highest resolution I can run is 500kb.
Beyond that, I simply get an empty file output.
Any suggestions? Thanks!
- Michael
Output below:
juicer_tools eigenvector KR ./aligned/inter_30.hic X BP 500000 ./aligned/eigenvector/eigen_X_500000bp.txt
Reading file: ./aligned/inter_30.hic
HiC file version: 8
juicer_tools eigenvector KR ./aligned/inter_30.hic X BP 100000 ./aligned/eigenvector/eigen_X_100000bp.txt
Reading file: ./aligned/inter_30.hic
HiC file version: 8
WARNING: Pearson's and eigenvector calculation at high resolution can take a long time
ls -lh aligned/eigenvector/
-rw-rw-r-- 1 michael.johnston1 michael.johnston1 0 Aug 18 11:35 eigen_X_100000bp.txt
-rw-rw-r-- 1 michael.johnston1 michael.johnston1 6.3K Aug 18 11:29 eigen_X_500000bp.txt