Empty post processed pixels

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Suba

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May 8, 2025, 2:52:09 AMMay 8
to 3D Genomics
Hi,

I am working with Juicer  hiccups for finding loops, using the following command
java -Xmx32g -jar $code_path/juicer_tools_1.22.01.jar hiccups  --threads 2 -r 10000 $infile $outdir
but I get empty post processed pixels and merged_loops. The hic files are generated from mcool files generated using nf-core/hic. could you please help me to understand the issue here

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