Error in running hiccupsdiff

[Rahul Kumar]

Hi, I successfully ran the Juicer and got the .hic and merged_loops.bedpe for both control and experimental sampl. Now I am trying to run hiccupsdiff but getting below error:

Data not available for chr1 at 5000 resolution

Data not available for chr2 at 5000 resolution

Data not available for chr3 at 5000 resolution

Data not available for chr4 at 5000 resolution

Data not available for chr5 at 5000 resolution

Data not available for chr6 at 5000 resolution

Data not available for chr7 at 5000 resolution

Data not available for chr8 at 5000 resolution

Data not available for chr9 at 5000 resolution

Data not available for chr10 at 5000 resolution and so on....

I am not able to understand what is wrong, can you please help, thank you in advance.

[Guy Nir]

Was this resolved? because I'm getting the same issue.

Guy

[Guy Nir]

eigenvector also not working - 

java -jar /Applications/juicer_tools.2.20.00.ac.jar eigenvector KR /Users/guynir/NirLab\ Dropbox/Nir\ Lab\ common/Naiju/Data/Hi-C/Novogene/DeepSeq/Int11/aligned/inter_30.hic 1 BP 5000 eigenChr1.txt

WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.

WARN [2023-05-09T09:13:21,906]  [Globals.java:138] [main]  Development mode is enabled

Unknown chromosome: 1

[Rahul Kumar]

After my thorough and extended efforts, I couldn't solved it yet.

Still waiting for developer's reply.

Please let me know if you find any solution. 

[Krithika B]

Is there a resolution for this ? Cannot get hiccupsdiff working no matter what. Is there an alternate tool ? Please advise.