Reverse conversion from .hic to merged_nodups.txt

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Alice Laigle

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May 11, 2025, 8:01:14 PMMay 11
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Dear developers, 

I would like to perform an aggregate chromosome analysis as in Hoecamp et al., 2021, where I need the merged_nodups.txt file (long format). However, I obtained my .hic files after converting HiC-Pro outputs. Is there any way to go from a .hic file to merged_nodups.txt?

Thank you for all the great tools you provide!!
Best wishes, 
Alice
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