Liftover of loop calls from Hg19 to Hg38?

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mikkel dahl-Jessen

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Mar 27, 2023, 7:52:35 PM3/27/23
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Hi, 

I have an Hg38 HiC dataset that I want to compare with some loop calls already available in the Juicebox database that are made from Hg19 HiC data. 

I figured, I could just download the Hg19 loop annotations from the juicebox database and use the UCSC liftover tool, but I think the .bedpe file is way too complicated as I keep getting an error message. Do you have a trick to do that conversion? 

Best, 
Mikkel


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