[3D-DNA] gawk:fatal error, scrape-mnd.awk:13: atal error,

[zhiqiang wang]

Hello! I've been trying to run the run-asm-pipeline.sh with 4.5Gb genome.fa and 379Gb merged_nodups.txt file as input.

Command:

run-asm-pipeline.sh  genome .fa merged_nodups.txt

Error :

###############
Starting iterating scaffolding with editing:
...starting round 0 of scaffolding:
:) -p flag was triggered. Running LIGer with GNU Parallel support parameter set to true.
:) -s flag was triggered, starting calculations with 15000 threshold starting contig/scaffold size
:) -q flag was triggered, starting calculations with 1 threshold mapping quality
...Using cprops file: kl14.hic.p_ctg.0.cprops
...Using merged_nodups file: kl14.hic.p_ctg.mnd.0.txt
...Scaffolding all scaffolds and contigs greater or equal to 15000 bp.
...Starting iteration # 1
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gawk: /home/zqwang/tools/3d-dna-master/scaffold/scrape-mnd.awk:13: fatal error： the file " h.scaffolds.original.notation.step.78.txt " cannot be opened for reading: there is no file or directory

gawk: /home/zqwang/tools/3d-dna-master/scaffold/scrape-mnd.awk:13: fatal error： the file " h.scaffolds.original.notation.step.78.txt " cannot be opened for reading: there is no file or directory

...

...

...

gawk: ../3d-dna-master/scaffold/scrape-mnd.awk:13: fatal error: the file "h.scores.step.79.txt " cannot be opened for reading: there is no file or directory

  gawk: ../3d-dna-master/scaffold/scrape-mnd.awk:13: fatal error: the file "h.scaffolds.original.notation.step.78.txt " cannot be opened for reading: there is no file or directory

:) DONE!
...visualizing round 0 results:
:) -p flag was triggered. Running with GNU Parallel support parameter set to true.
:) -q flag was triggered, starting calculations for 1 threshold mapping quality
:) -i flag was triggered, building mapq without
:) -c flag was triggered, will remove temporary files after completion
:( Not sure how to parse your input or input files not found at intended locations. Exiting!