Is it possible to add the "straw-R.cpp" to my R package ?

[DJEKIDEL MOHAMED NADHIR]

Hi, 

First, thank you very much for you much for all the great work (computationally and biologically).

I am recently writing a differential chromatin interaction detection package and I plan to provide support for the .hic files as they are fast to read and enable the loading of the region of interest. 

I am probably planing to submit the package to bioconductor, but if I don't know if I can integrate the "straw-R.cpp" in my package (with citation of course and link to your github repo).

An other solution is to directly download straw-R.cpp from github in my package. But, i am afraid it will not work in the case of people who use servers with internet connection access (to avoid security problems,... etc).

I would really appreciate it you could give me suggestion. 

Thanks again,

Nadhir

[Neva Durand]

Hello Nadhir,

Sounds great!  Yes, you can integrate straw-R.cpp into your package.  You should also probably follow updates to the git, because we will push a change soon to allow the C++ Straw to read from URL.

Best

Neva

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Neva Cherniavsky Durand, Ph.D.

Staff Scientist, Aiden Lab

www.aidenlab.org

[DJEKIDEL MOHAMED NADHIR]

Hi Neva, 

Thank you very much!

Best, 

Nadhir

On Thursday, April 27, 2017 at 4:02:22 AM UTC-4, Neva Durand wrote:

Hello Nadhir,

Sounds great!  Yes, you can integrate straw-R.cpp into your package.  You should also probably follow updates to the git, because we will push a change soon to allow the C++ Straw to read from URL.

Best

Neva

On Wed, Apr 26, 2017 at 5:55 PM, DJEKIDEL MOHAMED NADHIR <djek...@gmail.com> wrote:

Hi, 

First, thank you very much for you much for all the great work (computationally and biologically).

I am recently writing a differential chromatin interaction detection package and I plan to provide support for the .hic files as they are fast to read and enable the loading of the region of interest. 

I am probably planing to submit the package to bioconductor, but if I don't know if I can integrate the "straw-R.cpp" in my package (with citation of course and link to your github repo).

An other solution is to directly download straw-R.cpp from github in my package. But, i am afraid it will not work in the case of people who use servers with internet connection access (to avoid security problems,... etc).

I would really appreciate it you could give me suggestion. 

Thanks again,

Nadhir

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