how to generate merged_nodups.txt file for OMNI-C sequencing data using Juicer

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Pramod Pantha

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Jul 18, 2022, 8:16:26 PM7/18/22

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I m trying to use 3D-DNA for omni-c data for scaffolding assembled draft genome. I'm trying to follow chapter 3 of the genome assembly cookbook. But could not generate a restriction sites file for draft fasta because it does not have option for DNASE. Is there something I m missing here? Any help provided will be highly appreciated.

Thanks in advance.

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Pramod

Olga Dudchenko

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Jul 29, 2022, 2:56:18 PM7/29/22

to 3D Genomics

I think this was already answered. You use -y none when running Juicer. -Olga

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