This group is for asking question concerning RAxML, RAxML-Light, RAxML-EPA, and PaPaRa.

Please use the search function prior to posting questions, since most of the typical questions have already been answered in here.

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AA substitution matrix with parser (and ExaML) F 01.07.16
Problem reading alignment file Greg Noel 30.06.16
epa slow and fast placement algorithms gc...@connect.hku.hk 28.06.16
make: *** [axml.o] Error 1 when trying to compile Makefile.SSE3.PTHREADS.gcc S Pr 28.06.16
Estimating accurate Gamma-based branch lengths for large phylogenies with RAxML Jean-Baka Domelevo Entfellner 22.06.16
RAxML on FPGA Rishi 21.06.16
raxmlHPC-MPI -f a -m GTRGAMMA -p 12345 -x 12345 -# 100 -s dna.phy -n T20 Robert Logan 20.06.16
Log-likelihood discrepancy between Felsenstein & Stamatakis ascertainment bias corrections Asif 16.06.16
New url? Greg Noel 14.06.16
"Core Dumped" Error CapitaineRex69 14.06.16
PaPaRa compilation issue (tr1/memory and malloc.h files) Alicia S. Arroyo 14.06.16
Scale Bar in RAxML generated tree? Shagun Sharma 09.06.16
Assertion `rate >= 0.0001 && rate <= 1000000.0' failed. RAxML version 8.2.8 Prabhav Kalaghatgi 06.06.16
Learning RAxML Rishi 01.06.16
best ML tree vs cons tree Giorgio Matassi 31.05.16
How raxml treats gaps Rebecca 20.05.16
Default amount of ML searches when using the -f a option Allison Fuiten 19.05.16
RAxML-EPA output files Frédéric Delsuc 19.05.16
Segmentation fault: 11 for -f k Ana Jesovnik 19.05.16
Estimation of hundreds of gene trees for species tree analyses Jéssica Gillung 17.05.16
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