igv-help

Welcome to the igv-help group.  This is the official help and discussion forum for the Integrative Genomics Viewer (IGV). Please post questions, bug reports, and suggestions here. If you're having a problem, try searching this list to see if your question has already been addressed. Everyone is encouraged to contribute by suggesting bug fixes, and joining discussions of feature enhancements. Additional resources can be found at www.igv.org

If posting about a problem, please include:
  1. The version of IGV you are using, and your computer operating system.
  2. What you did. If the problem happens when you open a file and/or view certain genomic coordinates, attach the file* (or provide a link) and specify the genomic coordinates. Please DO NOT paste the contents of your file into an email or in the group's web interface, as files are whitespace sensitive which gets lost when sent in the body of an email. 
  3. What you expected to happen 
  4. What actually happened 
  5. Your igv.log file. It will be in <your home directory>/igv. 
Thanks,
The IGV team.


Showing 1-20 of 1896 topics
Loading from username/password protected ftp tom carroll 6/28/17
adding information on default reftable annotation Varun Gupta 6/27/17
snappy is disabled via system property my suh 6/26/17
rhemac8 Todd Bradley 6/23/17
Viewing VCF file from Veritas Dmitry Brant 6/22/17
Error with loading Ensemble gene annotations for mm10 Pabodha Hettige 6/22/17
Help with making tdf file with bed file as input Sheila Teves 6/22/17
Incorrect Read Colors with Orientation+Insert Size bradyf...@gmail.com 6/22/17
Cannot open IGV on Linux Mint Joseph Kuo 6/21/17
Error loading BAM file header Mar 6/15/17
Cannot find feature or locus for bed peak names Tunc Morova 6/14/17
IGV viewer closes after Windows 10 "Creator" update. Dennis Wright 6/12/17
Command to copy sequence Goutham Radha 6/12/17
fit data to window when running IGV with a batch file? sisterdot 6/12/17
Problems with java.lang.ArrayIndexOutOfBoundsException Woody Lin 6/9/17
gene name and track missing Mary Kroetz 6/9/17
How to find minimum coverage for each exon using IGV? FY Li 6/9/17
IGV stalled when zooming in Chantal 6/8/17
Is there any way to recover my regions of interest after igv freezes? Valeria King 6/7/17
blue square partial read jxru...@gmail.com 6/7/17
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