igv-help

Welcome to the igv-help group.  This is the official help and discussion forum for the Integrative Genomics Viewer (IGV). Please post questions, bug reports, and suggestions here. If you're having a problem, try searching this list to see if your question has already been addressed. Everyone is encouraged to contribute by suggesting bug fixes, and joining discussions of feature enhancements. Additional resources can be found at www.igv.org

If posting about a problem, please include:
  1. The version of IGV you are using, and your computer operating system.
  2. What you did. If the problem happens when you open a file and/or view certain genomic coordinates, attach the file* (or provide a link) and specify the genomic coordinates. Please DO NOT paste the contents of your file into an email or in the group's web interface, as files are whitespace sensitive which gets lost when sent in the body of an email. 
  3. What you expected to happen 
  4. What actually happened 
  5. Your igv.log file. It will be in <your home directory>/igv. 
Thanks,
The IGV team.


Showing 1-20 of 2060 topics
Simple case for beginner david martin 4/18/18
Problem In Installing IGV in my Laptop Showkat Zargar 4/17/18
Sequence Track Case Richard Chinnis 4/12/18
IGV on a multi-user Linux system kin...@gmail.com 4/12/18
Can not find hg38 in the server? Yang YU 4/12/18
Can't get annotation file to load Samantha 4/12/18
Caenorhabditis elegans Hawaiian Strain CB4856 Genome Assembly || PRJNA275000 Wadim Kapulkin 4/12/18
strand location of chip-se reads amm...@geisinger.edu 4/12/18
a shortcut key for "new session" Sun 4/5/18
IGV Batch snapshotDirectory with spaces in directory name Benoit Fiset 4/5/18
Upgrade old genome IDs Nicolás Spoto 4/5/18
ERROR [2018-04-01 03:05:03,188] [OAuthUtils.java:370] [pool-2-thread-3] Error fetching access token ted.higg...@gmail.com 4/3/18
Tiny fonts on a 4K screen Marek Gierliński 4/3/18
Error reading header: bad magic number converting text file may...@idbydna.com 4/1/18
Error while open iGV: [DefaultExceptionHandler.java:49] [AWT-EventQueue-0] Unhandled exception coronafy 4/1/18
how is autoscale calculated for bigWig vs tdf? Diya 3/30/18
must .bam files have their own line in my sampleAttribtes.txt file? Malcolm Cook 3/29/18
#sampleMapping in own file not working Malcolm Cook 3/29/18
how to disable downsampling alignments in batch script Bingding Huang 3/29/18
Equal signs on reads fvigoder 3/26/18
More topics »