igv-help

Welcome to the igv-help group.  This is the official help and discussion forum for the Integrative Genomics Viewer (IGV). Please post questions, bug reports, and suggestions here. If you're having a problem, try searching this list to see if your question has already been addressed. Everyone is encouraged to contribute by suggesting bug fixes, and joining discussions of feature enhancements. Additional resources can be found at www.igv.org

If posting about a problem, please include:
  1. The version of IGV you are using, and your computer operating system.
  2. What you did. If the problem happens when you open a file and/or view certain genomic coordinates, attach the file* (or provide a link) and specify the genomic coordinates. Please DO NOT paste the contents of your file into an email or in the group's web interface, as files are whitespace sensitive which gets lost when sent in the body of an email. 
  3. What you expected to happen 
  4. What actually happened 
  5. Your igv.log file. It will be in <your home directory>/igv. 
Thanks,
The IGV team.


Showing 1-20 of 2012 topics
AUTOSCALE GROUP in session metadata no longer implemented? tom carroll 1/17/18
Links to Launch and Load Data linking to old version of IGV Daniel Navarro-Gomez 1/17/18
Overlaying bedgraph/bigwig tracks Varun Gupta 1/17/18
Filter Duplicate reads AP 1/16/18
only show 1st track when loading multiple tdf or bigwig files when take snapshots by cmd line leihou...@gmail.com 1/16/18
Launch IGV with 10GB memory (igv24_hm version) sanje...@gmail.com 1/15/18
Blank tract when uploading bedgraph file Euan McDonnell 1/11/18
Is it proper to show ChIP-seq. fold-enrichment using log scale? kyl...@connect.hku.hk 1/11/18
Sashimi plot not responding/working sushant bangru 1/10/18
Failed visualization of Sashimi plots elisa ten hacken 1/10/18
VCF file will not upload Noa Wertheimer 1/8/18
Re: [igv-help] TP53 gene annotation hg19 Jim Robinson 1/5/18
XML session file up-to-date specifications? Scott Kallgren 12/22/17
Error encountered querying alignments: java.lang.NullPointerException Tom A 12/21/17
IGV screenshot WITHOUT internet connection skang6 12/20/17
Nucleotide count g.guerr...@gmail.com 12/18/17
Copy consensus sequence from many chromosomes at once Ales Bucek 12/17/17
midRange defined in track line is not set correctly Mara Heise 12/15/17
batch list of preference key value Guillaume Charbonnier 12/14/17
IGV 2.4.4 crashing when I zoom in to view junctions on a bam file thewatson...@gmail.com 12/13/17
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