igv-help

Welcome to the igv-help group.  This is the official help and discussion forum for the Integrative Genomics Viewer. Please post bug reports and suggestions here. If you're having a problem, try searching this list to see if your question has already been addressed. Other resources include the  FAQ and user guide. Everyone is encouraged to contribute by suggesting bug fixes, and joining discussions of feature enhancements. 

If you are posting about a problem, please include the error message (if applicable) and your igv.log file. It will be in <your home directory>/igv. See below for further instructions on posting a bug report.

Thanks very much,
The IGV team.

When posting a bug report, please include:
  1. The version of IGV you are using
  2. What you did. If the problem happens when you open a file and/or view certain genomic coordinates, attach the file* (or provide a link) and specify the genomic coordinates.
    (e.g. I opened a bedgraph file)
  3. What you expected to happen (I expected IGV to display my data)
  4. What actually happened (I received an error message saying "Unknown extension: .graph")
*If you wish to include data, please attach a file. DO NOT paste the contents of your file into an email, as files are whitespace sensitive which gets lost when sent in the body of an email. This list does accept small attachments through email, but only using the "new" google groups view. Alternatively, use your favorite mail client to send a message to igv-help@googlegroups.com.


Showing 1-20 of 1705 topics
How to load S3 hosted private files into IGV twe...@gmail.com 9/27/16
Re: [igv-help] diappearing feature Jim Robinson 9/27/16
Changing default colors for LOH track Shireen 9/27/16
Error loading gff3 file. Sumudu Rangi 9/26/16
filtering of read group Weihong Xu 9/24/16
Finding of mutation in genome with record like MTHFR C677T. ma.zat...@gmail.com 9/24/16
Color by pair orientation not working on bam Therese Mitros 9/23/16
Slow Viewing Speed for Files with Large Distance Between Paired Reads Dario Strbenac 9/23/16
stranded coverage and reads alignment ysueha...@gmail.com 9/23/16
Duplication Fragments showing as deletions (2.3.72) bradyf...@gmail.com 9/23/16
Request of a new hosted genome Vladimir Kaberdin 9/20/16
IGV server not rendering reads or variants Mark Cowley 9/19/16
Bos Taurus 8 refference genome Robert Rękawiecki 9/19/16
Sequence Tracking Ada 9/15/16
Viewing Many Alignments At Once Dario Strbenac 9/14/16
coverage track interpretation Yashoda Ghanekar 9/14/16
EPSGraphics Emily Wear 9/12/16
Ho to visualize promoter region for human genome in IGV? gsk bio 9/12/16
Tracks exported as BED files are not necessarily in BED format. elmo4...@gmail.com 9/12/16
Filter/hide tracks based on NM? shimmeri...@gmail.com 9/12/16
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