igv-help

Welcome to the igv-help group.  This is the official help and discussion forum for the Integrative Genomics Viewer. Please post bug reports and suggestions here. If you're having a problem, try searching this list to see if your question has already been addressed. Other resources include the  FAQ and user guide. Everyone is encouraged to contribute by suggesting bug fixes, and joining discussions of feature enhancements. 

If you are posting about a problem, please include the error message (if applicable) and your igv.log file. It will be in <your home directory>/igv. See below for further instructions on posting a bug report.

Thanks very much,
The IGV team.

When posting a bug report, please include:
  1. The version of IGV you are using
  2. What you did. If the problem happens when you open a file and/or view certain genomic coordinates, attach the file* (or provide a link) and specify the genomic coordinates.
    (e.g. I opened a bedgraph file)
  3. What you expected to happen (I expected IGV to display my data)
  4. What actually happened (I received an error message saying "Unknown extension: .graph")
*If you wish to include data, please attach a file. DO NOT paste the contents of your file into an email, as files are whitespace sensitive which gets lost when sent in the body of an email. This list does accept small attachments through email, but only using the "new" google groups view. Alternatively, use your favorite mail client to send a message to igv-help@googlegroups.com.


Showing 1-20 of 1849 topics
additional nucleotides Paulina Stadnik 4/21/17
IGV does not work phoenix 4/20/17
Unable to launch with 2GB \ big bam files don't display g.cro...@gmail.com 4/19/17
Alignment does not display david.ea...@duke.edu 4/14/17
Cannot see the entire genome khork...@gmail.com 4/13/17
Re: [igv-help] Identifying regions of low sequence depth Jim Robinson 4/12/17
Fwd: IGV Denis 4/11/17
Ensembl gene predictions for GRCz10 Kelly Banks 4/9/17
MAF interpreted as multiple alignment file vs. mutation annotation format Chip Stewart 4/7/17
Repeated IGV crashing past 2 days Russell Ryan 4/7/17
display a count numbers as bar chart Fred Shaw 4/6/17
Sashimi plot background colour Vijay Baskar 4/6/17
Cannot categorize reads by "sample" Balthazar Picsou 3/30/17
Help Federico Bernuzzi 3/30/17
How to select the window size to average counts using igvtools postgres-newbie 3/30/17
Limit the number of reads loaded Mark Cowley 3/30/17
Trying to visualize a series of bedgraph files with respect to a custom reference genome shah.v...@gmail.com 3/28/17
Problem loading BAM files: Error message "null" Stephen Ham 3/23/17
Calculating Coverage Allele Threshold Using .wig file jz...@tgen.org 3/21/17
Viewing Insertion/Deletions Mindy 3/19/17
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