ABySS

ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size. The parallel version is implemented using MPI and is capable of assembling larger genomes.

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please post your ABySS questions to BioStar! Ben Vandervalk 1/20/15
abyss-todot error Salim B 9/19/16
announcement: ABySS 2.0.1 release Ben Vandervalk 9/14/16
announcement: ABySS 2.0.0 release Ben Vandervalk 9/1/16
Issues configuring on High Throughput Computer Zach Cohen 8/31/16
ABYSS for Large Plant Genome ~ 600 to 900 MB Aditya Mehta 8/22/16
abyss-sealer Nisha pillai 8/2/16
non-standard fasta header format Matteo 7/22/16
Contig filter George Wang 5/9/16
Re: abyss question Shaun Jackman 4/26/16
Struggling with Forward Facing reads? jf0...@bristol.ac.uk 4/12/16
Abyss meta command line Inquiry Karen 4/5/16
Compiling ABySS with MPICH Alden Huang 2/25/16
installation of abyss-1.9.0 yifang 2/10/16
abyss-sealer scales not very well on many CPUs? Sven 2/9/16
Sealer/Konnector loading a bloom filter from a file Jennifer Shelton 2/9/16
Metagnomics assembly david martin 2/8/16
Re: abyss-map SAM MAPQ? Dan Browne 2/7/16
Trouble running sealer, looking for test/example data? Scott Geib 1/5/16
Using the ABySS pipeline to scaffold a DISCOVAR de novo assembly Dan Browne 12/14/15
Whole genome assembly using abyss-pe mpi Malabady 11/12/15
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