ABySS

ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size. The parallel version is implemented using MPI and is capable of assembling larger genomes.

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please post your ABySS questions to BioStar! Ben Vandervalk 1/20/15
PathConsensus Assertion `s.length() > overlap' failed Matthew MacManes 7/14/15
Lot of swap memory being used up Suyash Agarwal 7/3/15
Installation error with 'HAVE_LIBDL' scx...@gmail.com 7/2/15
Abyss assembly got stuck in generating adjency while running denovo whole genome assembly of about 300gb data Manmohan Pandey 6/26/15
output file format Won Cheol Yim 6/18/15
Installation problem Riccardo Aiese Cigliano 6/15/15
Add-on for ABySS to extend using Pacbio reads - Cerulean Viraj Deshpande 6/11/15
announcement: ABySS 1.9.0 release Ben Vandervalk 6/1/15
Intended use of konnector? Vang Le Quy 5/13/15
Any suggestion of running ABySS for about 50,000X coverage and paired-end 100 bp reads in genome size of 12.5 Mb - file size 770 Gb Giltae Song 5/5/15
ABYSS-P running! Fuyou Fu 4/28/15
Attempting to port ABySS over intel MIC Shazeb Nawaz Khan 4/27/15
ABYSS-P not found yifang 3/25/15
Error about running abyss on cluster Cai Zexi 3/22/15
Miseq (2x250) with ABySS vs Hiseq --- why aren't I getting longer contigs with longer reads? Natalie C 3/17/15
ABySS 1.5.2 test dataset runs forever Simone 3/11/15
BWA errors when attempting to used assembled sequence as scaffolds Travis Ptacek 1/23/15
abyss-fixmate: error: All reads are mateless Chris Plott 1/8/15
Long scaffolding with PacBio reads Matthew MacManes 1/7/15
De novo paired end Assembly with Abyss. Asking for help!!! Mehmet göktay 1/6/15
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