ABySS

ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size. The parallel version is implemented using MPI and is capable of assembling larger genomes.

Showing 1-21 of 1208 topics
please post your ABySS questions to BioStar! Ben Vandervalk 1/20/15
ABYSS-P not found yifang 3/25/15
Error about running abyss on cluster Cai Zexi 3/22/15
Miseq (2x250) with ABySS vs Hiseq --- why aren't I getting longer contigs with longer reads? ncc...@gmail.com 3/17/15
ABySS 1.5.2 test dataset runs forever Simone 3/11/15
BWA errors when attempting to used assembled sequence as scaffolds Travis Ptacek 1/23/15
abyss-fixmate: error: All reads are mateless Chris Plott 1/8/15
Long scaffolding with PacBio reads Matthew MacManes 1/7/15
De novo paired end Assembly with Abyss. Asking for help!!! Mehmet göktay 1/6/15
Error with abyss-overlap yifang 12/30/14
abyss-1.5.2 problem with memory Luca Cozzuto 12/15/14
Error with PathConsensus ... marcovth 12/11/14
using my own mate pair histogram for scaffolding Julie Hussin 12/5/14
Re: arguments for MergeContigs & fachain Shaun Jackman 12/4/14
abyss-map abyss-index error Kateřina Cviková 12/4/14
<<All reads are mateless>> error on test dataset Stelios B 11/27/14
Using library specific value for -l Matthew MacManes 11/25/14
Error in abyss-map Bret Boyd 11/20/14
Heteroyzgous genomes Alexandra Bastkowska 11/19/14
Unitig (-3.fa), contig (-6.fa) and scaffold (-8.fa) files are identical, with no warning given Steve 11/17/14
Cannot build ABYSS-P, MPI_Init in -lmpi... no Chris Coffey 11/14/14
More topics »