ABySS

ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size. The parallel version is implemented using MPI and is capable of assembling larger genomes.

Showing 1-21 of 1241 topics
please post your ABySS questions to BioStar! Ben Vandervalk 1/20/15
abyss-pe failure after files read aquat...@g.hmc.edu 4/6/17
abyss-sealer scales not very well on many CPUs? Sven 4/3/17
abyss-konnector installation problem Felipe Aguilera 2/2/17
coverage histogram chrisbala 1/10/17
abyss-pe error: duplicate read ID Alejandro Sanchez 1/4/17
runnign abyss-pe on PBS cluster Gautam Singh 11/3/16
abyss-todot error Salim B 9/19/16
announcement: ABySS 2.0.1 release Ben Vandervalk 9/14/16
announcement: ABySS 2.0.0 release Ben Vandervalk 9/1/16
Issues configuring on High Throughput Computer Zach Cohen 8/31/16
ABYSS for Large Plant Genome ~ 600 to 900 MB Aditya Mehta 8/22/16
abyss-sealer Nisha pillai 8/2/16
non-standard fasta header format Matteo 7/22/16
Contig filter George Wang 5/9/16
Re: abyss question Shaun Jackman 4/26/16
Struggling with Forward Facing reads? jf0...@bristol.ac.uk 4/12/16
Abyss meta command line Inquiry Karen 4/5/16
Compiling ABySS with MPICH Alden Huang 2/25/16
installation of abyss-1.9.0 yifang 2/10/16
Sealer/Konnector loading a bloom filter from a file Jennifer Shelton 2/9/16
More topics »