|RCytoscape and Adjacency Matrix||Dave||7/20/12 8:44 PM|
I am creating a graph using RCytoscape based off of a Adjacency matrix.
I have followed this example:
I have specficied the graph as being directed, yet there are no directional arrows when the graph is opened in cytoscape. Also, I am initializing and setting my edges as numerical float values and I do not see them being sent across to Cytoscape.
Is this example correct? In order to achieve the above (make my edges directional) and transmit edge attributes. What do I have to do in addition to what has been done in the posted example.
|Re: [Cytoscape-discuss] RCytoscape and Adjacency Matrix||Paul Shannon||7/23/12 11:14 AM|
The vignette explains all of these things -- and if things are left out, I will be glad to add them.
Try this to see the vignette:
> library (RCytoscape)
> browseVignettes ('RCytoscape')
Further detail -- a full-featured sample graph, and how to display it -- can be viewed this way:
Let me know if you get stuck.
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