Sailfish Users Group

Welcome to the Sailfish users group.  Sailfish is a software package for rapid k-mer based inference of transcript abundances from RNA-seq data.  See (or short URL for downloads and citation information. This Sailfish users group provides a forum beyond bug reports (which can be filed directly on the GitHub issues page for Sailfish).

Showing 1-20 of 129 topics
Reducing k-mer length in Salmon for reads < 75 nt Thomas Sandmann 10/19/16
Ribo-depletion Thomas Sandmann 10/17/16
Reordering / shuffling paired-end FASTQ files Thomas Sandmann 10/17/16
Handling of insertions/deletions/point mutations Chakri 10/16/16
STAR + Salmon Martin Selmansberger 10/16/16
RE: present/absent calls based on sailfish/salmon quantification Chakri 9/19/16
lib_format_counts.json Daniel Hyduke 9/19/16
Bimodal TPMs Daniel Hyduke 9/12/16
salmon 0.7.0 crashes in alignment mode Chi Zhang 9/9/16
salmon 0.7.0 crashes in alignment based mode Rob 8/19/16
No transcript names in output Chakri 8/19/16
Mapping Rate: 0% Carlos Guzman 8/17/16
effective gene length and TPM values in Salmon's output files Tzachi 8/3/16
nan values in quant files Tzachi 7/21/16
Re: [Sailfish Users Group msg. 453] Re: unmapped reads in Salmon Vasisht Tadigotla 6/22/16
Question on bootstrap segmentation fault and output LiveNKicking 6/21/16
Nested Transcripts and Salmon transcript estimates Daniel Gaston 6/16/16
cannot find -lstdc++ error on CentOS 7 when installing salmon-0.6.0 mccormack 6/16/16
Salmon stuck on large transcriptomes Vasisht Tadigotla 6/16/16
Abundance estimates - equal noise for all expression bins. N Vi 6/15/16
More topics »