Sailfish Users Group

Welcome to the Sailfish users group.  Sailfish is a software package for rapid k-mer based inference of transcript abundances from RNA-seq data.  See http://www.cs.cmu.edu/~ckingsf/software/sailfish/ (or short URL ongen.us/SFish) for downloads and citation information. This Sailfish users group provides a forum beyond bug reports (which can be filed directly on the GitHub issues page for Sailfish).

Showing 1-20 of 116 topics
Re: [Sailfish Users Group msg. 453] Re: unmapped reads in Salmon Vasisht Tadigotla 6/22/16
Question on bootstrap segmentation fault and output LiveNKicking 6/21/16
Nested Transcripts and Salmon transcript estimates Daniel Gaston 6/16/16
cannot find -lstdc++ error on CentOS 7 when installing salmon-0.6.0 mccormack 6/16/16
Salmon stuck on large transcriptomes Vasisht Tadigotla 6/16/16
Abundance estimates - equal noise for all expression bins. N Vi 6/15/16
unmapped reads in Salmon Vasisht Tadigotla 6/8/16
salmon/rapclust - output equivalence classes RobL 6/8/16
boost::math::digamma<long double>(long double): Evaluation of function at pole -nan Exception Daniel Gaston 5/31/16
Bootstraps Claire 5/21/16
How to combine multiple paired fastq files for quant James Lloyd 5/19/16
Salmon and differential splice / exon usage? Jonathan Manning 5/15/16
Salmon: v.low strandness reported wrt genomic alignment w/ RSeQC Jonathan Manning 5/12/16
expression for sense and antisense strands Serkan Erdin 5/10/16
nan values in quant files Tzachi 5/2/16
Problems with Salmon Installation shaun webb 4/28/16
Salmon hangs on computers without internet access Gavin Wilson 4/27/16
Are 40-50M PE 100bp reads valid to perform differential expression analysis at transcript level? Peng 4/24/16
Estimating Transcript Abundance with Salmon Mauricio Losilla 4/14/16
Mapping rate for salmon using different k and coverage Nick Bernstein 4/13/16
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