Sailfish Users Group

Welcome to the Sailfish users group.  Sailfish is a software package for rapid k-mer based inference of transcript abundances from RNA-seq data.  See (or short URL for downloads and citation information. This Sailfish users group provides a forum beyond bug reports (which can be filed directly on the GitHub issues page for Sailfish).

Showing 1-18 of 79 topics
Building index of human genome from .fna file morien 11/26/15
Salmon libtype Evelyne C 11/4/15
Sailfish quant returning Boost exceptions Robert Zinna 10/27/15
Sleuth analysis of Salmon output priyanka sinha 10/26/15
problems in quan step Hongji Dai 10/13/15
How to Normalize Salmon TPM output? Nick Bernstein 10/13/15
Salmon - Is it possible to get output in bigWig/TDF format? Erik Zhivkopljas 10/13/15
Single gene novel isoform quantification kelregan 10/10/15
running salmon in deterministic way jfliu1 9/15/15
Sailfish v0.7.4 gene level summary Zhenhua Wu 9/9/15
Running Salmon v0.4.2 for the first time Rutendo Sigauke 7/17/15
Artifact due to multi-reads aligned to 3'UTR? Jason L 7/11/15
Everything is zero except TPM Malay Basu 7/11/15
Salmon NumReads quantification among isoforms Pedro Blecua 6/30/15
Salmon - is there any way to induce output to enable a pileup for read depth across transcripts Matthew Hockin 6/10/15
salmon 0.4.0 core dump for genes Ido Tamir 6/8/15
Salmon and DESeq2 Matthew Hockin 6/2/15
Tuning Sailfish Performance vs Salmon Billy Lau 6/2/15
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