Sailfish Users Group

Welcome to the Sailfish users group.  Sailfish is a software package for rapid k-mer based inference of transcript abundances from RNA-seq data.  See (or short URL for downloads and citation information. This Sailfish users group provides a forum beyond bug reports (which can be filed directly on the GitHub issues page for Sailfish).

Showing 1-21 of 163 topics
Sailfish / Salmon User Feedback Survey Carl_Kingsford 3/27/17
Salmon tool giving an error about the library type vk 8:08 AM
During installation: Test #1: unit_tests failed Delong ZHOU 4/9/18
Error in sleuth_prep using salmon data Viktor 3/8/18
posBias format and visualization Jóhannes Guðbrandsson 3/1/18
Salmon index error Devinder Kaur 2/12/18
Salmon for Nanopore reads Nadine Dunn 2/4/18
Batch-correcting Salmon expression and outputting a new TPM expression matrix Toby 2/2/18
salmon/rapclust - output equivalence classes RobL 1/19/18
read mapping to multiple species Silpa Suthram 11/29/17
Understanding lib_format_counts.json Juanlu Trincado 11/17/17
problem with stranded single-end library with alignment-based method Hien To 11/10/17
running salmon on 3' end rna-seq data? Brian Haas 11/8/17
A question about lib_format_counts.json Nancy Dong 10/19/17
Salmon PacBio Anne Ndungu 9/21/17
Can we use Gencode Fasta with Salmon? philge philip 9/8/17
Counting Virus TPM using Salmon Benjy Jek Yang Tan 8/14/17
How to interpret Salmon outputs - lowly expressed contigs? Chrissie Madden 7/25/17
Salmon with single-end read: setting mean and std of insert length if distribution is not normal dmr210 7/19/17
library type warning Rob 7/12/17
Indels and Alignment-based mode John Ma 6/29/17
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