It's important to note the caveat about reload (documented in the
WhatsNew.md document when discussing the new yard server features)...
specifically, you cannot *remove* elements when using --reload. If you
rename or delete an item in your source, YARD will still display it. To
remove items you have to purge the .yardoc db. This is expected
behaviour; it is a limitation of the reload feature. The --reload
feature is mainly meant as a quick way to preview documentation that you
write, not as a way to synchronize documentation for code.
If you are not renaming/deleting items, please file a bug at
http://github.com/lsegal/yard/issues with the code that reproduces the
issue.
Loren