Thanks!
It seems to work fine! I can access xnat via localhost:8080. This was just done a WM in my laptop to learn and to make a WM I could with ease use as base if I was to setup a new XNAT here. Could I simply put this WM on one of our servers on the network, give it an IP adress and DNS name (and perhaps change the location of /data/xnat to a mounted storage disk) and then users could access it on the network?
Still, the warnings when launching tomcat7 are there in the beginning of the logs. Should I worry about the early messages from the catalina.out log? : The warning messages do show up again in the log since I guess it reboots tomcat when I restarted the WM. But that is in an newer version of the logfile. The warnings are pasted here and the entire logfile below if you want to see:
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
WARNING: Problem with directory [/usr/share/tomcat7/common/classes], exists: [false], isDirectory: [false], canRead: [false]
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
WARNING: Problem with directory [/usr/share/tomcat7/common], exists: [false], isDirectory: [false], canRead: [false]
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
WARNING: Problem with directory [/usr/share/tomcat7/server/classes], exists: [false], isDirectory: [false], canRead: [false]
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
WARNING: Problem with directory [/usr/share/tomcat7/server], exists: [false], isDirectory: [false], canRead: [false]
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
WARNING: Problem with directory [/usr/share/tomcat7/shared/classes], exists: [false], isDirectory: [false], canRead: [false]
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
WARNING: Problem with directory [/usr/share/tomcat7/shared], exists: [false], isDirectory: [false], canRead: [false]
Im also pasting all the text from the xnat logs below if you need it. Looked for any warnings and I saw some regardign pool size. If you want to read all I will paste it bewlow but the warnings I fould comes here, should I worry:
67201 [localhost-startStop-1] ERROR org.apache.axis.configuration.EngineConfigurationFactoryServlet - Unable to find config file. Creating new servlet engine config file: /WEB-INF/server-config.wsdd
67546 [localhost-startStop-1] ERROR org.apache.axis.configuration.EngineConfigurationFactoryServlet - Unable to find config file. Creating new servlet engine config file: /WEB-INF/server-config.wsdd
49561 [localhost-startStop-1] ERROR org.apache.axis.configuration.EngineConfigurationFactoryServlet - Unable to find config file. Creating new servlet engine config file: /WEB-INF/server-config.wsdd
49961 [localhost-startStop-1] ERROR org.apache.axis.configuration.EngineConfigurationFactoryServlet - Unable to find config file. Creating new servlet engine config file: /WEB-INF/server-config.wsdd
2017-01-05 07:54:06,619 [localhost-startStop-1] WARN org.nrg.xnat.initialization.DatabaseConfig - No value set for the XNAT datasource class, using the default value of org.apache.commons.dbcp2.BasicDataSource
2017-01-05 07:54:06,619 [localhost-startStop-1] WARN org.nrg.xnat.initialization.DatabaseConfig - No value set for the XNAT datasource initial connection pool size, using the default value of 20
2017-01-05 07:54:06,619 [localhost-startStop-1] WARN org.nrg.xnat.initialization.DatabaseConfig - No value set for the XNAT datasource maximum connection pool size, using the default value of 40
2017-01-05 07:54:06,619 [localhost-startStop-1] WARN org.nrg.xnat.initialization.DatabaseConfig - No value set for the XNAT datasource connection pool idle size, using the default value of 10
2017-01-05 08:18:31,613 [localhost-startStop-1] WARN org.nrg.xnat.initialization.DatabaseConfig - No value set for the XNAT datasource class, using the default value of org.apache.commons.dbcp2.BasicDataSource
2017-01-05 08:18:31,621 [localhost-startStop-1] WARN org.nrg.xnat.initialization.DatabaseConfig - No value set for the XNAT datasource initial connection pool size, using the default value of 20
2017-01-05 08:18:31,621 [localhost-startStop-1] WARN org.nrg.xnat.initialization.DatabaseConfig - No value set for the XNAT datasource maximum connection pool size, using the default value of 40
2017-01-05 08:18:31,621 [localhost-startStop-1] WARN org.nrg.xnat.initialization.DatabaseConfig - No value set for the XNAT datasource connection pool idle size, using the default value of 10
2017-01-05 07:54:42,828 Established shared JMS Connection: ActiveMQConnection {id=ID:osboxes-34891-1483602882077-3:1,clientId=null,started=false}
2017-01-05 08:19:00,938 Established shared JMS Connection: ActiveMQConnection {id=ID:osboxes-38835-1483604340356-3:1,clientId=null,started=false}
2017-01-05 07:54:46,771 [taskScheduler-1] WARN org.nrg.xnat.helpers.prearchive.SessionXMLRebuilder - Application is not yet initialized, session XML rebuild operation delayed until initialization completed.
2017-01-05 08:19:03,605 [taskScheduler-1] WARN org.nrg.xnat.helpers.prearchive.SessionXMLRebuilder - Application is not yet initialized, session XML rebuild operation delayed until initialization completed.
2017-01-05 08:26:08,718 [http-bio-8080-exec-7] ERROR org.nrg.xnat.restlet.actions.AutomationBasedImporter -
ALL LOGS IF YOU NEED
ALL CATALINA.OUT CONTENT:
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
WARNING: Problem with directory [/usr/share/tomcat7/common/classes], exists: [false], isDirectory: [false], canRead: [false]
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
WARNING: Problem with directory [/usr/share/tomcat7/common], exists: [false], isDirectory: [false], canRead: [false]
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
WARNING: Problem with directory [/usr/share/tomcat7/server/classes], exists: [false], isDirectory: [false], canRead: [false]
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
WARNING: Problem with directory [/usr/share/tomcat7/server], exists: [false], isDirectory: [false], canRead: [false]
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
WARNING: Problem with directory [/usr/share/tomcat7/shared/classes], exists: [false], isDirectory: [false], canRead: [false]
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.ClassLoaderFactory validateFile
WARNING: Problem with directory [/usr/share/tomcat7/shared], exists: [false], isDirectory: [false], canRead: [false]
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.VersionLoggerListener log
INFO: Server version: Apache Tomcat/7.0.72 (Ubuntu)
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.VersionLoggerListener log
INFO: Server built: Sep 20 2016 11:28:54 UTC
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.VersionLoggerListener log
INFO: Server number: 7.0.72.0
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.VersionLoggerListener log
INFO: OS Name: Linux
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.VersionLoggerListener log
INFO: OS Version: 4.8.0-22-generic
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.VersionLoggerListener log
INFO: Architecture: amd64
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.VersionLoggerListener log
INFO: Java Home: /usr/lib/jvm/java-7-oracle/jre
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.VersionLoggerListener log
INFO: JVM Version: 1.7.0_80-b15
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.VersionLoggerListener log
INFO: JVM Vendor: Oracle Corporation
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.VersionLoggerListener log
INFO: CATALINA_BASE: /var/lib/tomcat7
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.VersionLoggerListener log
INFO: CATALINA_HOME: /usr/share/tomcat7
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.VersionLoggerListener log
INFO: Command line argument: -Djava.util.logging.config.file=/var/lib/tomcat7/conf/logging.properties
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.VersionLoggerListener log
INFO: Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.VersionLoggerListener log
INFO: Command line argument: -Djava.awt.headless=true
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.VersionLoggerListener log
INFO: Command line argument: -Xms512m
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.VersionLoggerListener log
INFO: Command line argument: -Xmx2g
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.VersionLoggerListener log
INFO: Command line argument: -XX:+UseConcMarkSweepGC
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.VersionLoggerListener log
INFO: Command line argument: -XX:-OmitStackTraceInFastThrow
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.VersionLoggerListener log
INFO: Command line argument: -XX:MaxPermSize=512m
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.VersionLoggerListener log
INFO: Command line argument: -XX:+CMSIncrementalMode
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.VersionLoggerListener log
INFO: Command line argument: -XX:+CMSClassUnloadingEnabled
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.VersionLoggerListener log
INFO: Command line argument: -Djdk.tls.ephemeralDHKeySize=2048
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.VersionLoggerListener log
INFO: Command line argument: -Dxnat.home=/data/xnat/home
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.VersionLoggerListener log
INFO: Command line argument: -Djava.endorsed.dirs=/usr/share/tomcat7/endorsed
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.VersionLoggerListener log
INFO: Command line argument: -Dcatalina.base=/var/lib/tomcat7
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.VersionLoggerListener log
INFO: Command line argument: -Dcatalina.home=/usr/share/tomcat7
Jan 05, 2017 7:53:43 AM org.apache.catalina.startup.VersionLoggerListener log
INFO: Command line argument: -Djava.io.tmpdir=/tmp/tomcat7-tomcat7-tmp
Jan 05, 2017 7:53:44 AM org.apache.coyote.AbstractProtocol init
INFO: Initializing ProtocolHandler ["http-bio-8080"]
Jan 05, 2017 7:53:44 AM org.apache.catalina.startup.Catalina load
INFO: Initialization processed in 1015 ms
Jan 05, 2017 7:53:44 AM org.apache.catalina.core.StandardService startInternal
INFO: Starting service Catalina
Jan 05, 2017 7:53:44 AM org.apache.catalina.core.StandardEngine startInternal
INFO: Starting Servlet Engine: Apache Tomcat/7.0.72 (Ubuntu)
Jan 05, 2017 7:53:44 AM org.apache.catalina.startup.HostConfig deployWAR
INFO: Deploying web application archive /var/lib/tomcat7/webapps/ROOT.war
Jan 05, 2017 7:53:59 AM org.apache.catalina.startup.TldConfig execute
INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
SOURCE: /var/lib/tomcat7/webapps/ROOT/
Database up to date.
Jan 05, 2017 7:55:14 AM org.apache.catalina.startup.HostConfig deployWAR
INFO: Deployment of web application archive /var/lib/tomcat7/webapps/ROOT.war has finished in 89,993 ms
Jan 05, 2017 7:55:14 AM org.apache.coyote.AbstractProtocol start
INFO: Starting ProtocolHandler ["http-bio-8080"]
Jan 05, 2017 7:55:14 AM org.apache.catalina.startup.Catalina start
INFO: Server startup in 90113 ms
ALL XNAT LOGS2017-01-05 08:09:15,515 - admin 127.0.0.1 Authentication SUCCESS
2017-01-05 08:23:06,061 - admin 127.0.0.1 Authentication SUCCESS
2017-01-05 08:23:37,621 - admin 127.0.0.1 SCREEN: Index
2017-01-05 08:23:47,362 - admin 127.0.0.1 SCREEN: DataTypeSearch
2017-01-05 08:23:47,612 - admin 127.0.0.1 SCREEN: DataTypeSearch
2017-01-05 08:23:47,663 - admin 127.0.0.1 SCREEN: DataTypeSearch
2017-01-05 08:23:47,835 - admin 127.0.0.1 SCREEN: DataTypeSearch
2017-01-05 08:23:47,932 - admin 127.0.0.1 SCREEN: DataTypeSearch
2017-01-05 08:23:49,125 - admin 127.0.0.1 GET
http://localhost:8080/data/experiments?recent=true&XNAT_XHR=x5wa0q6lx-1483604627218&format=json 2017-01-05 08:23:49,127 - admin 127.0.0.1 GET
http://localhost:8080/data/search/saved?format=json 2017-01-05 08:23:49,154 - admin 127.0.0.1 GET
http://localhost:8080/data/projects?favorite=true&XNAT_XHR=xpjycitac-1483604626928&format=json 2017-01-05 08:23:49,154 - admin 127.0.0.1 GET
http://localhost:8080/data/projects?accessible=true&XNAT_XHR=xe7mwmh6d-1483604626910&format=json 2017-01-05 08:23:49,172 - admin 127.0.0.1 GET
http://localhost:8080/data/projects?accessible=true&XNAT_XHR=xarcgkvo3-1483604627213&format=json 2017-01-05 08:24:18,928 - admin 127.0.0.1 SCREEN: XDATScreen_add_xnat_projectData
2017-01-05 08:24:23,484 - admin 127.0.0.1 GET
http://localhost:8080/data/projects?favorite=true&XNAT_XHR=xs9a5ho7w-1483604663248&format=json 2017-01-05 08:24:23,547 - admin 127.0.0.1 GET
http://localhost:8080/data/projects?accessible=true&XNAT_XHR=x18pjb5er-1483604663230&format=json 2017-01-05 08:24:23,959 - admin 127.0.0.1 GET
http://localhost:8080/data/search/saved?format=json 2017-01-05 08:24:36,206 - admin 127.0.0.1 ACTION: AddProject
2017-01-05 08:24:38,988 - admin 127.0.0.1 SCREEN: XDATScreen_report_xnat_projectData xnat:projectData test
2017-01-05 08:24:45,302 - admin 127.0.0.1 GET
http://localhost:8080/data/projects?accessible=true&XNAT_XHR=xnnhqmm9d-1483604685099&format=json 2017-01-05 08:24:45,403 - admin 127.0.0.1 GET
http://localhost:8080/data/search/saved?format=json 2017-01-05 08:24:45,421 - admin 127.0.0.1 GET
http://localhost:8080/data/projects?favorite=true&XNAT_XHR=xajwsn4gx-1483604685138&format=json 2017-01-05 08:24:46,565 - admin 127.0.0.1 GET
http://localhost:8080/REST/projects/test/pars?format=json&stamp=1483604686510&rnd=1483604686511 2017-01-05 08:24:46,750 - admin 127.0.0.1 GET
http://localhost:8080/data/projects/test/config/tracers/tracers?XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e&format=json&rnd=1483604686684 2017-01-05 08:24:46,839 - admin 127.0.0.1 GET
http://localhost:8080/data/config/edit/projects/test/image/dicom/script?format=json&rnd=1483604686651 2017-01-05 08:24:46,975 - admin 127.0.0.1 GET
http://localhost:8080/data/projects/test/config/seriesImportFilter/config?XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e&format=json&rnd=1483604686655 2017-01-05 08:24:47,060 - admin 127.0.0.1 GET
http://localhost:8080/data/projects/test/resources/notifications/files/archival.lst?rnd=1483604686674 2017-01-05 08:24:47,289 - admin 127.0.0.1 GET
http://localhost:8080/data/projects/test/automation/handlers?XNAT_XHR=xoqacj90i-1483604687169&format=json 2017-01-05 08:24:47,442 - admin 127.0.0.1 GET
http://localhost:8080/data/automation/scripts?XNAT_XHR=x9zquikko-1483604687160&format=json 2017-01-05 08:24:47,514 - admin 127.0.0.1 GET
http://localhost:8080/data/projects/test/config/resource_config/script?contents=true&format=json&_=1483604681254 2017-01-05 08:24:47,544 - admin 127.0.0.1 GET
http://localhost:8080/REST/projects/test/searches/@xnat:subjectData?XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e&rnd=1483604687354 2017-01-05 08:24:47,641 - admin 127.0.0.1 GET
http://localhost:8080/data/projects/test/config/separatePETMR/config?contents=true×tamp=1483604687230 2017-01-05 08:24:47,830 - admin 127.0.0.1 GET
http://localhost:8080/data/projects/test/automation/handlers?format=json&XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e&_=1483604681255 2017-01-05 08:24:47,928 - admin 127.0.0.1 POST
http://localhost:8080/REST/search?XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e&format=json&cache=true&refresh=true 2017-01-05 08:24:47,934 - admin 127.0.0.1 GET
http://localhost:8080/data/automation/handlers?format=json&XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e&_=1483604681256 2017-01-05 08:24:48,385 - admin 127.0.0.1 GET
http://localhost:8080/REST/search/_test_xnat_col_subjectData_admin_1483604688183?format=xList&offset=0&limit=200&XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e&rnd=1483604688339 2017-01-05 08:24:56,401 - admin 127.0.0.1 ACTION: ProjectDownloadAction
2017-01-05 08:24:56,412 - admin 127.0.0.1 SCREEN: XDATScreen_download_sessions
2017-01-05 08:24:59,765 - admin 127.0.0.1 GET
http://localhost:8080/data/projects?favorite=true&XNAT_XHR=xhsbe51a1-1483604699706&format=json 2017-01-05 08:24:59,883 - admin 127.0.0.1 GET
http://localhost:8080/data/search/saved?format=json 2017-01-05 08:24:59,955 - admin 127.0.0.1 GET
http://localhost:8080/data/projects?accessible=true&XNAT_XHR=x8mlze48c-1483604699687&format=json 2017-01-05 08:25:05,279 - admin 127.0.0.1 SCREEN: XDATScreen_report_xnat_projectData xnat:projectData test
2017-01-05 08:25:10,172 - admin 127.0.0.1 GET
http://localhost:8080/data/projects?accessible=true&XNAT_XHR=xx44ojmpm-1483604709990&format=json 2017-01-05 08:25:10,287 - admin 127.0.0.1 GET
http://localhost:8080/data/projects?favorite=true&XNAT_XHR=x8xqh47xn-1483604710005&format=json 2017-01-05 08:25:10,359 - admin 127.0.0.1 GET
http://localhost:8080/data/search/saved?format=json 2017-01-05 08:25:11,552 - admin 127.0.0.1 GET
http://localhost:8080/REST/projects/test/pars?format=json&stamp=1483604711411&rnd=1483604711412 2017-01-05 08:25:11,662 - admin 127.0.0.1 GET
http://localhost:8080/data/projects/test/config/seriesImportFilter/config?XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e&format=json&rnd=1483604711588 2017-01-05 08:25:11,696 - admin 127.0.0.1 GET
http://localhost:8080/data/projects/test/resources/notifications/files/archival.lst?rnd=1483604711651 2017-01-05 08:25:11,855 - admin 127.0.0.1 GET
http://localhost:8080/data/projects/test/config/tracers/tracers?XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e&format=json&rnd=1483604711678 2017-01-05 08:25:11,908 - admin 127.0.0.1 GET
http://localhost:8080/data/config/edit/projects/test/image/dicom/script?format=json&rnd=1483604711581 2017-01-05 08:25:13,108 - admin 127.0.0.1 GET
http://localhost:8080/data/projects/test/config/resource_config/script?contents=true&format=json&_=1483604706842 2017-01-05 08:25:13,111 - admin 127.0.0.1 GET
http://localhost:8080/data/automation/scripts?XNAT_XHR=xsfrq9xuc-1483604712793&format=json 2017-01-05 08:25:13,141 - admin 127.0.0.1 GET
http://localhost:8080/REST/projects/test/searches/@xnat:subjectData?XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e&rnd=1483604712919 2017-01-05 08:25:13,191 - admin 127.0.0.1 GET
http://localhost:8080/data/projects/test/automation/handlers?XNAT_XHR=xguc2x9g6-1483604712799&format=json 2017-01-05 08:25:13,379 - admin 127.0.0.1 GET
http://localhost:8080/data/projects/test/config/separatePETMR/config?contents=true×tamp=1483604712852 2017-01-05 08:25:13,416 - admin 127.0.0.1 GET
http://localhost:8080/data/projects/test/automation/handlers?format=json&XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e&_=1483604706843 2017-01-05 08:25:13,439 - admin 127.0.0.1 POST
http://localhost:8080/REST/search?XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e&format=json&cache=true&refresh=true 2017-01-05 08:25:13,542 - admin 127.0.0.1 GET
http://localhost:8080/data/automation/handlers?format=json&XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e&_=1483604706844 2017-01-05 08:25:13,872 - admin 127.0.0.1 GET
http://localhost:8080/REST/search/_test_xnat_col_subjectData_admin_1483604713530?format=xList&offset=0&limit=200&XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e&rnd=1483604713702 2017-01-05 08:25:42,725 - admin 127.0.0.1 GET
http://localhost:8080/data/projects/test/config/resource_config/script?format=json&rnd=1483604742617 2017-01-05 08:25:45,302 - admin 127.0.0.1 GET
http://localhost:8080/data/automation/scripts?format=json&XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e&_=1483604706845 2017-01-05 08:25:53,213 - admin 127.0.0.1 PUT
http://localhost:8080/data/projects/test/config/resource_config/script?inbody=true&XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e 2017-01-05 08:25:53,332 - admin 127.0.0.1 GET
http://localhost:8080/data/projects/test/config/resource_config/script?format=json&rnd=1483604753259 2017-01-05 08:25:53,403 - admin 127.0.0.1 GET
http://localhost:8080/data/projects/test/config/resource_config/script?contents=true&format=json&_=1483604706846 2017-01-05 08:25:53,439 - admin 127.0.0.1 GET
http://localhost:8080/data/projects/test/automation/handlers?format=json&XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e&_=1483604706847 2017-01-05 08:25:53,512 - admin 127.0.0.1 GET
http://localhost:8080/data/projects/test/automation/handlers?format=json&XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e&_=1483604706848 2017-01-05 08:25:53,609 - admin 127.0.0.1 GET
http://localhost:8080/data/automation/handlers?format=json&XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e&_=1483604706849 2017-01-05 08:26:05,951 - admin 127.0.0.1 POST
http://localhost:8080/data/projects/test/resources/test/files/xnatlogs.txt?overwrite=false&update-stats=false&XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e&extract=true&sendemail=false 2017-01-05 08:26:08,704 - admin 127.0.0.1 POST
http://localhost:8080/REST/services/import?import-handler=automation&project=test&process=true&configuredResource=test&XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e&xsiType=xnat%3AprojectData 2017-01-05 08:26:08,858 - admin 127.0.0.1 POST
http://localhost:8080/data/services/refresh/catalog?resource=/archive/projects/test/resources/test&options=populateStats,append,delete,checksum&XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e 2017-01-05 08:26:08,917 - admin 127.0.0.1 SCREEN: XDATScreen_report_xnat_projectData xnat:projectData test
2017-01-05 08:26:14,520 - admin 127.0.0.1 GET
http://localhost:8080/data/projects?accessible=true&XNAT_XHR=xwq87drnb-1483604774255&format=json 2017-01-05 08:26:14,527 - admin 127.0.0.1 GET
http://localhost:8080/data/projects?favorite=true&XNAT_XHR=x1e09g4tl-1483604774293&format=json 2017-01-05 08:26:14,538 - admin 127.0.0.1 GET
http://localhost:8080/data/search/saved?format=json 2017-01-05 08:26:15,579 - admin 127.0.0.1 GET
http://localhost:8080/REST/projects/test/pars?format=json&stamp=1483604775411&rnd=1483604775412 2017-01-05 08:26:15,661 - admin 127.0.0.1 GET
http://localhost:8080/data/config/edit/projects/test/image/dicom/script?format=json&rnd=1483604775523 2017-01-05 08:26:15,739 - admin 127.0.0.1 GET
http://localhost:8080/data/projects/test/resources/notifications/files/archival.lst?rnd=1483604775563 2017-01-05 08:26:15,812 - admin 127.0.0.1 GET
http://localhost:8080/data/projects/test/config/seriesImportFilter/config?XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e&format=json&rnd=1483604775539 2017-01-05 08:26:15,827 - admin 127.0.0.1 GET
http://localhost:8080/data/projects/test/config/tracers/tracers?XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e&format=json&rnd=1483604775579 2017-01-05 08:26:16,624 - admin 127.0.0.1 GET
http://localhost:8080/data/automation/scripts?XNAT_XHR=xgk7oag1a-1483604776511&format=json 2017-01-05 08:26:16,662 - admin 127.0.0.1 GET
http://localhost:8080/data/projects/test/automation/handlers?XNAT_XHR=xa2qyyfed-1483604776532&format=json 2017-01-05 08:26:16,717 - admin 127.0.0.1 GET
http://localhost:8080/data/projects/test/config/resource_config/script?contents=true&format=json&_=1483604770665 2017-01-05 08:26:16,829 - admin 127.0.0.1 GET
http://localhost:8080/data/projects/test/config/separatePETMR/config?contents=true×tamp=1483604776617 2017-01-05 08:26:16,888 - admin 127.0.0.1 GET
http://localhost:8080/REST/projects/test/searches/@xnat:subjectData?XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e&rnd=1483604776692 2017-01-05 08:26:17,066 - admin 127.0.0.1 GET
http://localhost:8080/data/projects/test/automation/handlers?format=json&XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e&_=1483604770666 2017-01-05 08:26:17,148 - admin 127.0.0.1 POST
http://localhost:8080/REST/search?XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e&format=json&cache=true&refresh=true 2017-01-05 08:26:17,214 - admin 127.0.0.1 GET
http://localhost:8080/data/automation/handlers?format=json&XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e&_=1483604770667 2017-01-05 08:26:17,423 - admin 127.0.0.1 GET
http://localhost:8080/REST/search/_test_xnat_col_subjectData_admin_1483604777228?format=xList&offset=0&limit=200&XNAT_CSRF=074d17b1-6224-406c-b2f2-3966c1c0aa6e&rnd=1483604777361 2017-01-05 08:26:23,125 - admin 127.0.0.1 GET
http://localhost:8080/REST/projects/test/resources?all=true&format=json&file_stats=true&sortBy=category,cat_id,label×tamp=1483604782971&rnd=1483604782972 2017-01-05 08:40:50,720 - admin 127.0.0.1 Authentication SUCCESS
2017-01-05 08:40:50,895 - admin 127.0.0.1 SCREEN: Index
2017-01-05 08:40:56,123 - admin 127.0.0.1 GET
http://localhost:8080/data/projects?accessible=true&XNAT_XHR=xr2pnier8-1483605655861&format=json 2017-01-05 08:40:56,141 - admin 127.0.0.1 GET
http://localhost:8080/data/projects?favorite=true&XNAT_XHR=xmnt0x4mu-1483605655895&format=json 2017-01-05 08:40:56,349 - admin 127.0.0.1 GET
http://localhost:8080/data/search/saved?format=json 2017-01-05 08:40:56,482 - admin 127.0.0.1 SCREEN: DataTypeSearch
2017-01-05 08:40:56,497 - admin 127.0.0.1 SCREEN: DataTypeSearch
2017-01-05 08:40:56,502 - admin 127.0.0.1 SCREEN: DataTypeSearch
2017-01-05 08:40:56,623 - admin 127.0.0.1 SCREEN: DataTypeSearch
2017-01-05 08:40:56,686 - admin 127.0.0.1 GET
http://localhost:8080/data/experiments?recent=true&XNAT_XHR=x250kuv97-1483605656170&format=json 2017-01-05 08:40:56,742 - admin 127.0.0.1 SCREEN: DataTypeSearch
2017-01-05 08:40:56,806 - admin 127.0.0.1 GET
http://localhost:8080/data/projects?accessible=true&XNAT_XHR=xd7txzs0q-1483605656161&format=json 2017-01-05 08:41:02,243 - admin 127.0.0.1 SCREEN: Page
2017-01-05 08:41:06,636 - admin 127.0.0.1 GET
http://localhost:8080/data/projects?favorite=true&XNAT_XHR=xlea5qev7-1483605666401&format=json 2017-01-05 08:41:06,658 - admin 127.0.0.1 GET
http://localhost:8080/data/search/saved?format=json 2017-01-05 08:41:06,713 - admin 127.0.0.1 GET
http://localhost:8080/data/projects?accessible=true&XNAT_XHR=x5u3abd91-1483605666366&format=json 2017-01-05 08:50:24,234 - admin 127.0.0.1 SCREEN: Index
2017-01-05 08:50:27,975 - admin 127.0.0.1 GET
http://localhost:8080/data/projects?accessible=true&XNAT_XHR=xftm9efin-1483606227729&format=json 2017-01-05 08:50:27,979 - admin 127.0.0.1 GET
http://localhost:8080/data/projects?favorite=true&XNAT_XHR=xqwfk6vae-1483606227755&format=json 2017-01-05 08:50:28,023 - admin 127.0.0.1 GET
http://localhost:8080/data/search/saved?format=json 2017-01-05 08:50:28,266 - admin 127.0.0.1 GET
http://localhost:8080/data/projects?accessible=true&XNAT_XHR=xx9r0q9bg-1483606228063&format=json 2017-01-05 08:50:28,360 - admin 127.0.0.1 SCREEN: DataTypeSearch
2017-01-05 08:50:28,361 - admin 127.0.0.1 SCREEN: DataTypeSearch
2017-01-05 08:50:28,395 - admin 127.0.0.1 SCREEN: DataTypeSearch
2017-01-05 08:50:28,405 - admin 127.0.0.1 SCREEN: DataTypeSearch
2017-01-05 08:50:28,576 - admin 127.0.0.1 SCREEN: DataTypeSearch
2017-01-05 08:50:28,617 - admin 127.0.0.1 GET
http://localhost:8080/data/experiments?recent=true&XNAT_XHR=xm22k5zba-1483606228080&format=json 2017-01-05 08:50:30,158 - admin 127.0.0.1 SCREEN: Page
2017-01-05 08:50:33,775 - admin 127.0.0.1 GET
http://localhost:8080/data/projects?accessible=true&XNAT_XHR=xfxaxdfkb-1483606233614&format=json 2017-01-05 08:50:33,846 - admin 127.0.0.1 GET
http://localhost:8080/data/projects?favorite=true&XNAT_XHR=xzdxkap06-1483606233624&format=json 2017-01-05 08:50:33,865 - admin 127.0.0.1 GET
http://localhost:8080/data/search/saved?format=json 2017-01-05 08:50:53,440 - admin 127.0.0.1 SCREEN: Index
2017-01-05 08:50:57,161 - admin 127.0.0.1 GET
http://localhost:8080/data/projects?favorite=true&XNAT_XHR=xwf6yiigb-1483606256985&format=json 2017-01-05 08:50:57,192 - admin 127.0.0.1 GET
http://localhost:8080/data/search/saved?format=json 2017-01-05 08:50:57,214 - admin 127.0.0.1 GET
http://localhost:8080/data/projects?accessible=true&XNAT_XHR=xcx5ao6b7-1483606256966&format=json 2017-01-05 08:50:57,366 - admin 127.0.0.1 SCREEN: DataTypeSearch
2017-01-05 08:50:57,574 - admin 127.0.0.1 SCREEN: DataTypeSearch
2017-01-05 08:50:57,649 - admin 127.0.0.1 GET
http://localhost:8080/data/projects?accessible=true&XNAT_XHR=xb68o7xkt-1483606257292&format=json 2017-01-05 08:50:57,698 - admin 127.0.0.1 SCREEN: DataTypeSearch
2017-01-05 08:50:57,700 - admin 127.0.0.1 SCREEN: DataTypeSearch
2017-01-05 08:50:57,702 - admin 127.0.0.1 SCREEN: DataTypeSearch
2017-01-05 08:50:57,884 - admin 127.0.0.1 GET
http://localhost:8080/data/experiments?recent=true&XNAT_XHR=xtk068npt-1483606257309&format=json 67201 [localhost-startStop-1] ERROR org.apache.axis.configuration.EngineConfigurationFactoryServlet - Unable to find config file. Creating new servlet engine config file: /WEB-INF/server-config.wsdd
67546 [localhost-startStop-1] ERROR org.apache.axis.configuration.EngineConfigurationFactoryServlet - Unable to find config file. Creating new servlet engine config file: /WEB-INF/server-config.wsdd
49561 [localhost-startStop-1] ERROR org.apache.axis.configuration.EngineConfigurationFactoryServlet - Unable to find config file. Creating new servlet engine config file: /WEB-INF/server-config.wsdd
49961 [localhost-startStop-1] ERROR org.apache.axis.configuration.EngineConfigurationFactoryServlet - Unable to find config file. Creating new servlet engine config file: /WEB-INF/server-config.wsdd
2017-01-05 07:54:06,619 [localhost-startStop-1] WARN org.nrg.xnat.initialization.DatabaseConfig - No value set for the XNAT datasource class, using the default value of org.apache.commons.dbcp2.BasicDataSource
2017-01-05 07:54:06,619 [localhost-startStop-1] WARN org.nrg.xnat.initialization.DatabaseConfig - No value set for the XNAT datasource initial connection pool size, using the default value of 20
2017-01-05 07:54:06,619 [localhost-startStop-1] WARN org.nrg.xnat.initialization.DatabaseConfig - No value set for the XNAT datasource maximum connection pool size, using the default value of 40
2017-01-05 07:54:06,619 [localhost-startStop-1] WARN org.nrg.xnat.initialization.DatabaseConfig - No value set for the XNAT datasource connection pool idle size, using the default value of 10
2017-01-05 08:18:31,613 [localhost-startStop-1] WARN org.nrg.xnat.initialization.DatabaseConfig - No value set for the XNAT datasource class, using the default value of org.apache.commons.dbcp2.BasicDataSource
2017-01-05 08:18:31,621 [localhost-startStop-1] WARN org.nrg.xnat.initialization.DatabaseConfig - No value set for the XNAT datasource initial connection pool size, using the default value of 20
2017-01-05 08:18:31,621 [localhost-startStop-1] WARN org.nrg.xnat.initialization.DatabaseConfig - No value set for the XNAT datasource maximum connection pool size, using the default value of 40
2017-01-05 08:18:31,621 [localhost-startStop-1] WARN org.nrg.xnat.initialization.DatabaseConfig - No value set for the XNAT datasource connection pool idle size, using the default value of 10
2017-01-05 07:54:42,828 Established shared JMS Connection: ActiveMQConnection {id=ID:osboxes-34891-1483602882077-3:1,clientId=null,started=false}
2017-01-05 08:19:00,938 Established shared JMS Connection: ActiveMQConnection {id=ID:osboxes-38835-1483604340356-3:1,clientId=null,started=false}
2017-01-05 07:54:46,771 [taskScheduler-1] WARN org.nrg.xnat.helpers.prearchive.SessionXMLRebuilder - Application is not yet initialized, session XML rebuild operation delayed until initialization completed.
2017-01-05 08:19:03,605 [taskScheduler-1] WARN org.nrg.xnat.helpers.prearchive.SessionXMLRebuilder - Application is not yet initialized, session XML rebuild operation delayed until initialization completed.
2017-01-05 08:26:08,718 [http-bio-8080-exec-7] ERROR org.nrg.xnat.restlet.actions.AutomationBasedImporter -
java.lang.NullPointerException
at org.nrg.xnat.restlet.actions.AutomationBasedImporter.buildWorkflow(AutomationBasedImporter.java:751)
at org.nrg.xnat.restlet.actions.AutomationBasedImporter.createWorkflowEntry(AutomationBasedImporter.java:393)
at org.nrg.xnat.restlet.actions.AutomationBasedImporter.processUpload(AutomationBasedImporter.java:197)
at org.nrg.xnat.restlet.actions.AutomationBasedImporter.call(AutomationBasedImporter.java:155)
at org.nrg.xnat.restlet.services.Importer.handlePost(Importer.java:221)
at org.restlet.Finder.handle(Finder.java:357)
at org.restlet.Filter.doHandle(Filter.java:150)
at org.restlet.Filter.handle(Filter.java:195)
at org.restlet.Router.handle(Router.java:504)
at org.restlet.Filter.doHandle(Filter.java:150)
at org.restlet.Filter.handle(Filter.java:195)
at org.restlet.Filter.doHandle(Filter.java:150)
at org.restlet.Filter.handle(Filter.java:195)
at org.restlet.Router.handle(Router.java:504)
at org.restlet.Filter.doHandle(Filter.java:150)
at org.restlet.Filter.handle(Filter.java:195)
at org.restlet.Filter.doHandle(Filter.java:150)
at org.restlet.Filter.handle(Filter.java:195)
at org.restlet.Filter.doHandle(Filter.java:150)
at com.noelios.restlet.StatusFilter.doHandle(StatusFilter.java:130)
at org.restlet.Filter.handle(Filter.java:195)
at org.restlet.Filter.doHandle(Filter.java:150)
at org.restlet.Filter.handle(Filter.java:195)
at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124)
at com.noelios.restlet.application.ApplicationHelper.handle(ApplicationHelper.java:112)
at org.restlet.Application.handle(Application.java:341)
at org.restlet.Filter.doHandle(Filter.java:150)
at org.restlet.Filter.handle(Filter.java:195)
at org.restlet.Router.handle(Router.java:504)
at org.restlet.Filter.doHandle(Filter.java:150)
at org.restlet.Filter.handle(Filter.java:195)
at org.restlet.Router.handle(Router.java:504)
at org.restlet.Filter.doHandle(Filter.java:150)
at com.noelios.restlet.StatusFilter.doHandle(StatusFilter.java:130)
at org.restlet.Filter.handle(Filter.java:195)
at org.restlet.Filter.doHandle(Filter.java:150)
at org.restlet.Filter.handle(Filter.java:195)
at com.noelios.restlet.ChainHelper.handle(ChainHelper.java:124)
at org.restlet.Component.handle(Component.java:673)
at org.restlet.Server.handle(Server.java:331)
at com.noelios.restlet.ServerHelper.handle(ServerHelper.java:68)
at com.noelios.restlet.http.HttpServerHelper.handle(HttpServerHelper.java:147)
at com.noelios.restlet.ext.servlet.ServerServlet.service(ServerServlet.java:881)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:731)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at net.bull.javamelody.MonitoringFilter.doFilter(MonitoringFilter.java:200)
at net.bull.javamelody.MonitoringFilter.doFilter(MonitoringFilter.java:178)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.nrg.xnat.restlet.util.UpdateExpirationCookie.doFilter(UpdateExpirationCookie.java:37)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:316)
at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:126)
at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:90)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:114)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:122)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.authentication.AnonymousAuthenticationFilter.doFilter(AnonymousAuthenticationFilter.java:111)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.nrg.xnat.security.XnatInitCheckFilter.doFilter(XnatInitCheckFilter.java:51)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:169)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:48)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.nrg.xnat.security.XnatBasicAuthenticationFilter.doFilterInternal(XnatBasicAuthenticationFilter.java:143)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.authentication.AbstractAuthenticationProcessingFilter.doFilter(AbstractAuthenticationProcessingFilter.java:205)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:120)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.header.HeaderWriterFilter.doFilterInternal(HeaderWriterFilter.java:64)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter.doFilterInternal(WebAsyncManagerIntegrationFilter.java:53)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.session.ConcurrentSessionFilter.doFilter(ConcurrentSessionFilter.java:133)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.nrg.xnat.security.XnatExpiredPasswordFilter.doFilter(XnatExpiredPasswordFilter.java:184)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:91)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.access.channel.ChannelProcessingFilter.doFilter(ChannelProcessingFilter.java:152)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:213)
at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:176)
at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:346)
at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:262)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:219)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:505)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:169)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:956)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:442)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1083)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:640)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:318)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
2017-01-05 08:09:16,342 [http-bio-8080-exec-7] WARN org.nrg.xnat.security.XnatInitCheckFilter - Admin user admin has logged into the uninitialized server and is being redirected to
http://localhost:8080/setup2017-01-05 08:09:26,163 [http-bio-8080-exec-3] WARN org.nrg.xnat.security.XnatInitCheckFilter - Admin user admin has logged into the uninitialized server and is being redirected to
http://localhost:8080/setup2017-01-05 08:23:07,239 [http-bio-8080-exec-10] WARN org.nrg.xnat.security.XnatInitCheckFilter - Admin user admin has logged into the uninitialized server and is being redirected to
http://localhost:8080/setup2017-01-05 08:23:10,246 [http-bio-8080-exec-11] WARN org.nrg.xnat.security.XnatInitCheckFilter - Admin user admin has logged into the uninitialized server and is being redirected to
http://localhost:8080/setup2017-01-05 07:55:13,180 - SELECT pg_get_serial_sequence('xnat_projectData_resource','xnat_projectData_resource_id') AS col_name
2017-01-05 07:55:13,218 - SELECT pg_get_serial_sequence('xnat_projectData_investigator','xnat_projectData_investigator_id') AS col_name
2017-01-05 07:55:13,221 - SELECT * FROM xnat_projectData_investigator_xnat_projectData_investigator_id_seq
2017-01-05 07:55:13,222 - SELECT * FROM xnat_projectData_investigator_xnat_projectData_investigator__seq
2017-01-05 07:55:13,230 - SELECT pg_get_serial_sequence('xnat_subjectData_resource','xnat_subjectData_resource_id') AS col_name
2017-01-05 07:55:13,237 - SELECT pg_get_serial_sequence('xnat_experimentData_resource','xnat_experimentData_resource_id') AS col_name
2017-01-05 07:55:13,237 - SELECT * FROM xnat_experimentData_resource_xnat_experimentData_resource_id_seq
2017-01-05 07:55:13,261 - SELECT pg_get_serial_sequence('xnat_datatypeProtocol_fieldGroups','xnat_datatypeProtocol_fieldGroups_id') AS col_name
2017-01-05 07:55:13,262 - SELECT * FROM xnat_datatypeProtocol_fieldGroups_xnat_datatypeProtocol_fieldGroups_id_seq
2017-01-05 07:55:13,263 - SELECT * FROM xnat_datatypeProtocol_fieldGro_xnat_datatypeProtocol_fieldGro_seq
2017-01-05 08:19:22,809 - SELECT pg_get_serial_sequence('xnat_projectData_resource','xnat_projectData_resource_id') AS col_name
2017-01-05 08:19:22,812 - SELECT pg_get_serial_sequence('xnat_projectData_investigator','xnat_projectData_investigator_id') AS col_name
2017-01-05 08:19:22,813 - SELECT * FROM xnat_projectData_investigator_xnat_projectData_investigator_id_seq
2017-01-05 08:19:22,813 - SELECT * FROM xnat_projectData_investigator_xnat_projectData_investigator__seq
2017-01-05 08:19:22,817 - SELECT pg_get_serial_sequence('xnat_subjectData_resource','xnat_subjectData_resource_id') AS col_name
2017-01-05 08:19:22,820 - SELECT pg_get_serial_sequence('xnat_experimentData_resource','xnat_experimentData_resource_id') AS col_name
2017-01-05 08:19:22,820 - SELECT * FROM xnat_experimentData_resource_xnat_experimentData_resource_id_seq
2017-01-05 08:19:22,827 - SELECT pg_get_serial_sequence('xnat_datatypeProtocol_fieldGroups','xnat_datatypeProtocol_fieldGroups_id') AS col_name
2017-01-05 08:19:22,827 - SELECT * FROM xnat_datatypeProtocol_fieldGroups_xnat_datatypeProtocol_fieldGroups_id_seq
2017-01-05 08:19:22,828 - SELECT * FROM xnat_datatypeProtocol_fieldGro_xnat_datatypeProtocol_fieldGro_seq
2017-01-05 08:19:01,379 [taskScheduler-1] INFO org.nrg.xnat.initialization.tasks.CreateOrUpdateDatabaseViews - This service is the primary XNAT node, checking whether database updates are required.
2017-01-05 08:19:01,431 [taskScheduler-1] INFO org.nrg.xnat.initialization.tasks.AbstractInitializingTask - The table 'xdat_search.xs_item_access' does not yet exist. Deferring execution.
2017-01-05 08:19:01,623 [taskScheduler-1] INFO org.nrg.xnat.initialization.tasks.AbstractInitializingTask - The system is not yet fully initialized. Delaying execution of the intializing task "System Path Verification" until initialization is completed.
2017-01-05 08:19:01,626 [taskScheduler-1] INFO org.nrg.xnat.initialization.tasks.UpdateConfigurationService - No suspect configuration entries found.
2017-01-05 08:19:01,626 [taskScheduler-1] INFO org.nrg.xnat.initialization.tasks.AbstractInitializingTask - The system is not yet fully initialized. Delaying execution of the intializing task "Update new secure definitions" until initialization is completed.
2017-01-05 08:19:16,626 [taskScheduler-1] INFO org.nrg.xnat.initialization.tasks.CreateOrUpdateDatabaseViews - This service is the primary XNAT node, checking whether database updates are required.
2017-01-05 08:19:31,631 [taskScheduler-1] INFO org.nrg.xnat.initialization.tasks.CreateOrUpdateDatabaseViews - This service is the primary XNAT node, checking whether database updates are required.
2017-01-05 08:19:31,638 [taskScheduler-1] INFO org.nrg.xnat.initialization.tasks.CreateOrUpdateDatabaseViews - Initializing database views...
2017-01-05 08:09:23,525 [http-bio-8080-exec-10] INFO org.nrg.xapi.rest.settings.SiteConfigApi - The site is being initialized by user admin. Setting default values from context.
2017-01-05 08:09:25,106 [http-bio-8080-exec-10] INFO org.nrg.xapi.rest.notifications.NotificationsApi - The site is being initialized by user admin. Setting default values from context.
2017-01-05 08:09:26,323 [http-bio-8080-exec-2] INFO org.nrg.xapi.rest.settings.SiteConfigApi - The site is being initialized by user admin. Setting default values from context.
2017-01-05 08:09:26,400 [http-bio-8080-exec-2] INFO org.nrg.xapi.rest.notifications.NotificationsApi - The site is being initialized by user admin. Setting default values from context.
2017-01-05 08:23:08,504 [http-bio-8080-exec-2] INFO org.nrg.xapi.rest.settings.SiteConfigApi - The site is being initialized by user admin. Setting default values from context.
2017-01-05 08:23:09,456 [http-bio-8080-exec-2] INFO org.nrg.xapi.rest.notifications.NotificationsApi - The site is being initialized by user admin. Setting default values from context.
2017-01-05 08:23:10,393 [http-bio-8080-exec-11] INFO org.nrg.xapi.rest.settings.SiteConfigApi - The site is being initialized by user admin. Setting default values from context.
2017-01-05 08:23:10,431 [http-bio-8080-exec-11] INFO org.nrg.xapi.rest.notifications.NotificationsApi - The site is being initialized by user admin. Setting default values from context.
2017-01-05 08:23:34,124 [http-bio-8080-exec-1] INFO org.nrg.xapi.rest.settings.SiteConfigApi - Set property siteId to value: XNAT
2017-01-05 08:23:34,127 [http-bio-8080-exec-8] INFO org.nrg.xapi.rest.notifications.NotificationsApi - Set property smtpEnabled to value: true
2017-01-05 08:23:34,140 [http-bio-8080-exec-4] INFO org.nrg.xapi.rest.settings.SiteConfigApi - Set property requireLogin to value: true
2017-01-05 08:23:34,182 [http-bio-8080-exec-8] INFO org.nrg.xapi.rest.notifications.NotificationsApi - Set property smtpProtocol to value: smtp
2017-01-05 08:23:34,190 [http-bio-8080-exec-7] INFO org.nrg.xapi.rest.settings.SiteConfigApi - Set property archivePath to value: /data/xnat/archive
2017-01-05 08:23:34,203 [http-bio-8080-exec-4] INFO org.nrg.xapi.rest.settings.SiteConfigApi - Set property userRegistration to value: false
2017-01-05 08:23:34,248 [http-bio-8080-exec-1] INFO org.nrg.xapi.rest.settings.SiteConfigApi - Set property siteUrl to value:
http://localhost:80802017-01-05 08:23:34,248 [http-bio-8080-exec-4] INFO org.nrg.xapi.rest.settings.SiteConfigApi - Set property enableCsrfToken to value: true
2017-01-05 08:23:34,249 [http-bio-8080-exec-8] INFO org.nrg.xapi.rest.notifications.NotificationsApi - Set property smtpSslTrust to value:
2017-01-05 08:23:34,279 [http-bio-8080-exec-7] INFO org.nrg.xapi.rest.settings.SiteConfigApi - Set property prearchivePath to value: /data/xnat/prearchive
2017-01-05 08:23:34,289 [http-bio-8080-exec-8] INFO org.nrg.xapi.rest.notifications.NotificationsApi - Set property smtpUsername to value:
2017-01-05 08:23:34,290 [http-bio-8080-exec-1] INFO org.nrg.xapi.rest.settings.SiteConfigApi - Set property adminEmail to value:
y...@yoursite.org2017-01-05 08:23:34,313 [http-bio-8080-exec-10] INFO org.nrg.xapi.rest.notifications.NotificationsApi - Set property emailRecipientUpdate to value:
y...@yoursite.org2017-01-05 08:23:34,338 [http-bio-8080-exec-7] INFO org.nrg.xapi.rest.settings.SiteConfigApi - Set property cachePath to value: /data/xnat/cache
2017-01-05 08:23:34,339 [http-bio-8080-exec-8] INFO org.nrg.xapi.rest.notifications.NotificationsApi - Set property emailPrefix to value: XNAT
2017-01-05 08:23:34,357 [http-bio-8080-exec-8] INFO org.nrg.xapi.rest.notifications.NotificationsApi - Set property smtpStartTls to value: false
2017-01-05 08:23:34,364 [http-bio-8080-exec-8] INFO org.nrg.xapi.rest.notifications.NotificationsApi - Set property smtpPort to value: 25
2017-01-05 08:23:34,372 [http-bio-8080-exec-8] INFO org.nrg.xapi.rest.notifications.NotificationsApi - Set property smtpAuth to value: false
2017-01-05 08:23:34,380 [http-bio-8080-exec-7] INFO org.nrg.xapi.rest.settings.SiteConfigApi - Set property buildPath to value: /data/xnat/build
2017-01-05 08:23:34,385 [http-bio-8080-exec-8] INFO org.nrg.xapi.rest.notifications.NotificationsApi - Set property smtpHostname to value: localhost
2017-01-05 08:23:34,437 [http-bio-8080-exec-7] INFO org.nrg.xapi.rest.settings.SiteConfigApi - Set property ftpPath to value: /data/xnat/ftp
2017-01-05 08:23:34,439 [http-bio-8080-exec-10] INFO org.nrg.xapi.rest.notifications.NotificationsApi - Set property emailRecipientErrorMessages to value:
y...@yoursite.org2017-01-05 08:23:34,476 [http-bio-8080-exec-10] INFO org.nrg.xapi.rest.notifications.NotificationsApi - Set property helpContactInfo to value:
y...@yoursite.org2017-01-05 08:23:34,489 [http-bio-8080-exec-7] INFO org.nrg.xapi.rest.settings.SiteConfigApi - Set property pipelinePath to value: /data/xnat/pipeline
2017-01-05 08:23:34,545 [http-bio-8080-exec-10] INFO org.nrg.xapi.rest.notifications.NotificationsApi - Set property emailRecipientNewUserAlert to value:
y...@yoursite.org2017-01-05 08:23:34,578 [http-bio-8080-exec-10] INFO org.nrg.xapi.rest.notifications.NotificationsApi - Set property emailRecipientIssueReports to value:
y...@yoursite.org