--
You received this message because you are subscribed to the Google Groups "xnat_discussion" group.
To unsubscribe from this group and stop receiving emails from it, send an email to xnat_discussi...@googlegroups.com.
To post to this group, send email to xnat_di...@googlegroups.com.
Visit this group at https://groups.google.com/group/xnat_discussion.
For more options, visit https://groups.google.com/d/optout.
xnatUrl=http://master:8080
siteName=qNAT
adminEmail=in...@ser-ve.it
smtpServer=smtp.server.it
destination=/media/NAS/qNATitab/data/qnat/pipeline
127.0.0.1 master master
127.0.0.1 localhost
::1 ip6-localhost ip6-loopback
fe00::0 ip6-localnet
ff00::0 ip6-mcastprefix
ff02::1 ip6-allnodes
ff02::2 ip6-allrouters
ff02::3 ip6-allhosts
192.168.30.228 master
192.168.0.71 master
192.168.0.72 worker1
192.168.0.73 worker2
192.168.0.74 worker3
192.168.0.75 worker4
192.168.0.76 worker5
192.168.0.77 worker6
192.168.0.78 worker7
How did you set up your pipeline engine? Did you run the pipeline setup script? The reason I ask is that the server http://localhost:8080/ is a default value that the pipeline engine uses if you have not told it a different address for your server.
Flavin
On Feb 11, 2017, at 10:14 AM, piero.chia...@gmail.com wrote:
Hi xnat experts,I try to lunch a pipeline but 've this message:
/media/NAS/qNATitab/data/qnat/pipeline/bin/schedule /media/NAS/qNATitab/data/qnat/pipeline/bin/XnatPipelineLauncher -pipeline /media/NAS/qNATitab/data/qnat/pipeline/catalog/xnat-pipelines/QAP/qap_anat_processing.xml -id qNAT_E00001 -host http://192.168.30.228:8080 -u 9356b705-aa6a-4aba-a3d8-8dfe2854aa34 -pwd ******** -dataType xnat:mrSessionData -recordWorkflow false -label sub01_MR1 -supressNotification -project "test01" -parameterFile /media/NAS/qNATitab/data/qnat/build/test01/20170211_150430/sub01_MR1/sub01_MR1_params_20170211.xml -notify p.chiacc...@unich.it -notify in...@ser-ve.it -parameter mailhost='xxxxxxx' -parameter userfullname='xxxxxxxxx' -parameter builddir='/media/NAS/qNATitab/data/qnat/build/test01/20170211_150430' -parameter xnatserver='qNAT' -parameter adminema...@ser-ve.it' -parameter useremail='p....@unich.it'
Scheduling Command: /media/NAS/qNATitab/data/qnat/pipeline/bin/XnatPipelineLauncher -pipeline /media/NAS/qNATitab/data/qnat/pipeline/catalog/xnat-pipelines/QAP/qap_anat_processing.xml -id qNAT_E00001 -host http://192.168.30.228:8080 -u 9356b705-aa6a-4aba-a3d8-8dfe2854aa34 -pwd '20170211_150430' qNAT_E00001_wrk.xml -dataType xnat:mrSessionData -recordWorkflow false -label sub01_MR1 -supressNotification -project test01 -parameterFile /media/NAS/qNATitab/data/qnat/build/test01/20170211_150430/sub01_MR1/sub01_MR1_params_20170211.xml -notify p.chiacc...@unich.it -notify xxxxxxxxt -parameter mailhost=xxxxxxx -parameter userfullname=xxxxxxx -parameter builddir=/media/NAS/qNATitab/data/qnat/build/test01/20170211_150430 -parameter xnatserver=xNAT -parameter adminem...@ser-ve.it -parameter useremail=p.c...@unich.it -config /media/NAS/qNATitab/data/qnat/pipeline/pipeline.config -catalogPath /media/NAS/qNATitab/data/qnat/pipeline/catalogthanks
The errors you are seeing in that log indicate to me that the pipeline engine can't connect to your XNAT. It appears that it first tries to connect at http://localhost:8080/, and then at http://192.168.30.228:8080/ (which was specified as the "-host" argument when the pipeline was launched), and fails to connect to either address.It also appears that you are using a custom schedule script to submit your pipeline jobs to a grid engine. Is that grid engine running on a different machine than your XNAT server? If it is outside your local network, than local addresses (like the two noted above) will not work. Can you log in to that machine and verify that you can connect to XNAT at the addresses noted above?Flavin
On Feb 13, 2017, at 9:34 AM, piero.chia...@gmail.com wrote:
So i download the xnat-pipeline-1.7.2.zip
then i modified the gradle.properties:
schedule file :
-----------------------------------------------------------------
#!/bin/bash
log_file=/media/NAS/qNATitab/data/qnat/home/logs/grid-queue.log
logstart () {
echo `date` >> $1
echo -------------------------------------------------- >> $1
}
logend () {
echo -------------------------------------------------- >> $1
}
logstart $logfile
echo /media/NAS/qNATitab/data/qnat/pipeline/bin/PipelineJobSubmitter $* $
/media/NAS/qNATitab/data/qnat/pipeline/bin/PipelineJobSubmitter $*
logend $logfile
exit 0;
----------------------------------------------------------------------------------------------------------------The errors you are seeing in that log indicate to me that the pipeline engine can't connect to your XNAT. It appears that it first tries to connect at http://localhost:8080/, and then at http://192.168.30.228:8080/ (which was specified as the "-host" argument when the pipeline was launched), and fails to connect to either address.It also appears that you are using a custom schedule script to submit your pipeline jobs to a grid engine. Is that grid engine running on a different machine than your XNAT server? If it is outside your local network, than local addresses (like the two noted above) will not work. Can you log in to that machine and verify that you can connect to XNAT at the addresses noted above?Flavin
On Feb 13, 2017, at 9:34 AM, piero.chia...@gmail.com wrote:
So i download the xnat-pipeline-1.7.2.zip
then i modified the gradle.properties: