detailed instructions on update hlall.fa file and bed files

[Vladimir Makarov]

Dear Developers,

I am trying to obtain the latest db files. I was able to update Jul 2012 multiple segment alignment files for the April 2014 from

sites like http://hla.alleles.org/data/txt/a_nuc.txt, etc.

The hlall.fa file and bed files are dated Jul  8  2013. The documentation which comes in Athlates_2014_04_26 states:

"Collect all HLA cDNA and genomic sequences from the HLA/IMGT database to generate a

multi-fasta file [hlall.fa]. For example, in the ATHLATES release folder, this file is named

[hla.clean.fasta] in the db/ref/ folder.

A_nucgen.bed and non_A.bed are pre-curated bed file and they should be updated whenever

[hlall.fa] is updated."

As this is crucial for proper software functioning, would it be possible to publish detailed, step-by-step instructions?

Thank you very much for the tool,

Vlad