Math v2.10.0 and Stan v2.10.0 tagged

[Daniel Lee]

Hi all,

I got it tagged and released this morning.

Math: https://github.com/stan-dev/math/releases/tag/v2.10.0

Stan: https://github.com/stan-dev/stan/releases/tag/v2.10.0

If you're working on an interface, use the tagged versions.

Daniel

[Bob Carpenter]

Woo-hoo! Thanks, Daniel!

- Bob

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[Krzysztof Sakrejda]

On Friday, June 17, 2016 at 11:14:09 AM UTC-4, Daniel Lee wrote:
> Hi all,
>
> I got it tagged and released this morning.
>
> Math: https://github.com/stan-dev/math/releases/tag/v2.10.0
> Stan: https://github.com/stan-dev/stan/releases/tag/v2.10.0

Progress! Congrats. Krzysztof

[Ben Goodrich]

I am getting a compiler error on Windows. See the bottom of

http://win-builder.r-project.org/u7zD08v4zXW4/00install.out

Ring any bells?

Ben

[Ben Goodrich]

Attached is the slightly different error from clang++-3.8.

Ben

[Bob Carpenter]

Thanks. That's not happening under any of our other builds
and the error path doesn't ring any bells.

Which version of Boost is BH using? The problems bubbling
up from some of the Boost sequence tools.

I could try simplifying that grammar rule's recursion and
see if that helps. It's one that got added a while ago with
the new ODE expressions.

Otherwise, I'm not sure how to recreate the problem.

- Bob

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> <error.txt>

[Daniel Lee]

Ben, did you add the -DFUSION_MAX_VECTOR_SIZE=12 arg to the build? I didn't see it in the output.

[Bob Carpenter]

Good memory! That's probably it as this revolves around vector
processing templates in Boost.

- Bob

[Ben Goodrich]

On Friday, June 17, 2016 at 2:50:48 PM UTC-4, Bob Carpenter wrote:

Good memory!  That's probably it as this revolves around vector
processing templates in Boost.

OK. That fixed it on Windows and it has been working on Travis for OSX. I still get

https://github.com/stan-dev/rstan/issues/298

on Linux with clang++-3.8.

Ben
 

> On Jun 17, 2016, at 2:49 PM, Daniel Lee <bea...@alum.mit.edu> wrote:
>
> Ben, did you add the -DFUSION_MAX_VECTOR_SIZE=12 arg to the build? I didn't see it in the output.
>
> On Fri, Jun 17, 2016 at 2:43 PM, Bob Carpenter <ca...@alias-i.com> wrote:
> Thanks.  That's not happening under any of our other builds
> and the error path doesn't ring any bells.
>
> Which version of Boost is BH using?  The problems bubbling
> up from some of the Boost sequence tools.
>
> I could try simplifying that grammar rule's recursion and
> see if that helps.  It's one that got added a while ago with
> the new ODE expressions.
>
> Otherwise, I'm not sure how to recreate the problem.
>
> - Bob
>
> > On Jun 17, 2016, at 2:20 PM, Ben Goodrich <goodri...@gmail.com> wrote:
> >
> > On Friday, June 17, 2016 at 2:11:12 PM UTC-4, Ben Goodrich wrote:
> > I am getting a compiler error on Windows. See the bottom of
> >
> > http://win-builder.r-project.org/u7zD08v4zXW4/00install.out
> >
> > Ring any bells?
> >
> > Attached is the slightly different error from clang++-3.8.
> >
> > Ben
> >
> >
> >
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> > <error.txt>
>
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>
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[Bob Carpenter]

I just commented on the issue. We can remove the offending lines
in rethrow_located and default to more generic behavior for that
one type of exception. No big deal.

- Bob

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> > > <error.txt>
> >
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> >
> >
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[Ben Goodrich]

On Friday, June 17, 2016 at 4:08:54 PM UTC-4, Bob Carpenter wrote:

I just commented on the issue.  We can remove the offending lines
in rethrow_located and default to more generic behavior for that
one type of exception.  No big deal.

I will try that. At the moment, I am now getting a parser error from the rstanarm models that I don't understand:

SYNTAX ERROR, MESSAGE(S) FROM PARSER:


ERROR at line 301

 299:      real ll_bern_lp(vector eta0, vector eta1, int link, int[] N) {
 300:        if (link == 1) { // logit
 301:          target += logistic_lccdf(eta0, 0, 1);
                                       ^
 302:          target += logistic_lcdf(eta1, 0, 1);

PARSER EXPECTED: <probability function arguments>
Error in stanc(model_code = paste(program, collapse = "\n"), model_name = model_cppname,  :
  failed to parse Stan model 'bernoulli' due to the above error.

What is the syntax supposed to be these days?

Ben

[Ben Goodrich]

On Friday, June 17, 2016 at 4:08:54 PM UTC-4, Bob Carpenter wrote:

I just commented on the issue.  We can remove the offending lines
in rethrow_located and default to more generic behavior for that
one type of exception.  No big deal.

That works, but I still can't parse Stan programs with the new syntax.

Ben

[Ben Goodrich]

target += logistic_lccdf(eta0 | 0, 1)

also fails. I don't think a parser error that says "PARSER EXPECTED: <probability function arguments>" is very informative.

Ben

[Bob Carpenter]

Can you send me the whole program? I tried to recreate
with this:

functions {
void foo_lp(real eta) {
target += logistic_lccdf(eta | 0, 1);
}
}
parameters {
real eta0;
}
model {
foo_lp(eta0);
}

and it compiles fine on my machine.

It's easy to add more information to the error message and I'm
open to suggestions.

What it's looking for is expression, then optionally a vertical
bar and then a sequence of further expressions separated by commas:

expression
| expression '|' (expression % ','))

where (expression % ',') indicates 1 or more expressions separated
by commas.

- Bob