Build failed in Jenkins: Stan Unit Tests #1646

[mc.sta...@gmail.com]

See <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/1646/>

------------------------------------------
Started by user Daniel Lee
Building in workspace <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/ws/>
Checkout:workspace / <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/ws/> - hudson.remoting.LocalChannel@1471dd2
Using strategy: Default
Last Built Revision: Revision edfbbd44d916805f961423844907b78163a4f3d3 (origin/master)
Fetching changes from 1 remote Git repository
Fetching upstream changes from https://code.google.com/p/stan/
ERROR: Problem fetching from origin / origin - could be unavailable. Continuing anyway
hudson.plugins.git.GitException: Command "git.exe fetch -t https://code.google.com/p/stan/ +refs/heads/*:refs/remotes/origin/*" returned status code 255:
stdout:
stderr: error: cannot open .git/FETCH_HEAD: Permission denied


at hudson.plugins.git.GitAPI.launchCommandIn(GitAPI.java:855)
at hudson.plugins.git.GitAPI.launchCommand(GitAPI.java:817)
at hudson.plugins.git.GitAPI.fetch(GitAPI.java:197)
at hudson.plugins.git.GitAPI.fetch(GitAPI.java:1063)
at hudson.plugins.git.GitSCM.fetchFrom(GitSCM.java:812)
at hudson.plugins.git.GitSCM.access$100(GitSCM.java:90)
at hudson.plugins.git.GitSCM$2.invoke(GitSCM.java:1096)
at hudson.plugins.git.GitSCM$2.invoke(GitSCM.java:1064)
at hudson.FilePath.act(FilePath.java:842)
at hudson.FilePath.act(FilePath.java:824)
at hudson.plugins.git.GitSCM.checkout(GitSCM.java:1064)
at hudson.model.AbstractProject.checkout(AbstractProject.java:1256)
at hudson.model.AbstractBuild$AbstractBuildExecution.defaultCheckout(AbstractBuild.java:589)
at jenkins.scm.SCMCheckoutStrategy.checkout(SCMCheckoutStrategy.java:88)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:494)
at hudson.model.Run.execute(Run.java:1502)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:46)
at hudson.model.ResourceController.execute(ResourceController.java:88)
at hudson.model.Executor.run(Executor.java:236)
ERROR: Could not fetch from any repository
FATAL: Could not fetch from any repository
hudson.plugins.git.GitException: Could not fetch from any repository
at hudson.plugins.git.GitSCM$2.invoke(GitSCM.java:1103)
at hudson.plugins.git.GitSCM$2.invoke(GitSCM.java:1064)
at hudson.FilePath.act(FilePath.java:842)
at hudson.FilePath.act(FilePath.java:824)
at hudson.plugins.git.GitSCM.checkout(GitSCM.java:1064)
at hudson.model.AbstractProject.checkout(AbstractProject.java:1256)
at hudson.model.AbstractBuild$AbstractBuildExecution.defaultCheckout(AbstractBuild.java:589)
at jenkins.scm.SCMCheckoutStrategy.checkout(SCMCheckoutStrategy.java:88)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:494)
at hudson.model.Run.execute(Run.java:1502)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:46)
at hudson.model.ResourceController.execute(ResourceController.java:88)
at hudson.model.Executor.run(Executor.java:236)

[mc.sta...@gmail.com]

See <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/1651/changes>

Changes:

[Bob Carpenter] fixed issue with hidden dims for corr_matrix, cov_matrix, simplex, and ordered

[bearlee] adding agrad tests for vector<var/double> as arguments

[bearlee] split tests into a second typed test due to limit of 50 in google test, added D** tests

[Bob Carpenter] added to-do items for RStan transforms and higher-order diffs

[Bob Carpenter] added array, vector, and matrix templates to print and remove agrad adjoints

[Bob Carpenter] fixed the double define error in non-template code

[bearlee] refactored test

[bearlee] added vectorized tests for v** and d**

[bearlee] updating function signatures

[bearlee] updating tests: finite diffs have been relaxed, added more informative error messages

[bearlee] updating cauchy tests

[bearlee] added rest of beta_log tests to function_signatures

[guojq28] implement support of print statement

[bearlee] updating cauchy, updating function_signatures

[bearlee] updating function doc

[bearlee] adding additional test calling all versions of function

[Bob Carpenter] added covariance model to tested models for parser

[bearlee] vectorized double_exponential distribution

[Bob Carpenter] trivially modified good_cov.stan file

[bearlee] added test for normal distribution

[bearlee] updating function signatures for double_exponential

[guojq28] bugs example vol3 funshapes/ring

[Bob Carpenter] moved transformed params to generated quantities for ring model

[bearlee] cleaning up coding error in double_exponential

[bearlee] refactoring double_exponential

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[...truncated 2341 lines...]
[----------] Global test environment set-up.
[----------] 1 test from stanMcmcAdaptiveSampler
[ RUN ] stanMcmcAdaptiveSampler.headerParses
[ OK ] stanMcmcAdaptiveSampler.headerParses (0 ms)
[----------] 1 test from stanMcmcAdaptiveSampler (0 ms total)

[----------] Global test environment tear-down
[==========] 1 test from 1 test case ran. (0 ms total)
[ PASSED ] 1 test.
Running main() from gtest_main.cc
[==========] Running 1 test from 1 test case.
[----------] Global test environment set-up.
[----------] 1 test from stanMcmcChains
[ RUN ] stanMcmcChains.headerParses
[ OK ] stanMcmcChains.headerParses (0 ms)
[----------] 1 test from stanMcmcChains (0 ms total)

[----------] Global test environment tear-down
[==========] 1 test from 1 test case ran. (0 ms total)
[ PASSED ] 1 test.
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test/file_includes/stan_mcmc_hmc.exe --gtest_output="xml:test/file_includes/stan_mcmc_hmc.xml";
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test/file_includes/stan_mcmc_nuts_diag.exe --gtest_output="xml:test/file_includes/stan_mcmc_nuts_diag.xml";
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test/file_includes/stan_mcmc_nuts.exe --gtest_output="xml:test/file_includes/stan_mcmc_nuts.xml";
Running main() from gtest_main.cc
[==========] Running 1 test from 1 test case.
[----------] Global test environment set-up.
[----------] 1 test from stanMcmcHmcBase
[ RUN ] stanMcmcHmcBase.headerParses
[ OK ] stanMcmcHmcBase.headerParses (0 ms)
[----------] 1 test from stanMcmcHmcBase (0 ms total)

[----------] Global test environment tear-down
[==========] 1 test from 1 test case ran. (0 ms total)
[ PASSED ] 1 test.
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test/file_includes/stan_mcmc_sampler.exe --gtest_output="xml:test/file_includes/stan_mcmc_sampler.xml";
Running main() from gtest_main.cc
[==========] Running 1 test from 1 test case.
[----------] Global test environment set-up.
[----------] 1 test from stanMcmcHmc
[ RUN ] stanMcmcHmc.headerParses
[ OK ] stanMcmcHmc.headerParses (0 ms)
[----------] 1 test from stanMcmcHmc (0 ms total)

[----------] Global test environment tear-down
Running main() from gtest_main.cc
[==========] Running 1 test from 1 test case.
[----------] Global test environment set-up.
[----------] 1 test from stanMcmcNutsDiag
[ RUN ] stanMcmcNutsDiag.headerParses
[ OK ] stanMcmcNutsDiag.headerParses (0 ms)
[----------] 1 test from stanMcmcNutsDiag (0 ms total)

[----------] Global test environment tear-down
[==========] 1 test from 1 test case ran. (0 ms total)
[ PASSED ] 1 test.
[==========] 1 test from 1 test case ran. (0 ms total)
[ PASSED ] 1 test.
------------------------------------------------------------
test/file_includes/stan_mcmc.exe --gtest_output="xml:test/file_includes/stan_mcmc.xml";
Running main() from gtest_main.cc
[==========] Running 1 test from 1 test case.
[----------] Global test environment set-up.
[----------] 1 test from stanMcmcNuts
[ RUN ] stanMcmcNuts.headerParses
[ OK ] stanMcmcNuts.headerParses (0 ms)
[----------] 1 test from stanMcmcNuts (0 ms total)

[----------] Global test environment tear-down
[==========] 1 test from 1 test case ran. (0 ms total)
[ PASSED ] 1 test.
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test/file_includes/stan_mcmc_util.exe --gtest_output="xml:test/file_includes/stan_mcmc_util.xml";
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test/file_includes/stan_memory_stack_alloc.exe --gtest_output="xml:test/file_includes/stan_memory_stack_alloc.xml";
Running main() from gtest_main.cc
[==========] Running 1 test from 1 test case.
[----------] Global test environment set-up.
[----------] 1 test from stanMcmcSampler
[ RUN ] stanMcmcSampler.headerParses
[ OK ] stanMcmcSampler.headerParses (0 ms)
[----------] 1 test from stanMcmcSampler (0 ms total)

[----------] Global test environment tear-down
[==========] 1 test from 1 test case ran. (0 ms total)
[ PASSED ] 1 test.
Running main() from gtest_main.cc
[==========] Running 1 test from 1 test case.
[----------] Global test environment set-up.
[----------] 1 test from stanMcmc
[ RUN ] stanMcmc.headerParses
[ OK ] stanMcmc.headerParses (0 ms)
[----------] 1 test from stanMcmc (0 ms total)

[----------] Global test environment tear-down
[==========] 1 test from 1 test case ran. (0 ms total)
[ PASSED ] 1 test.
Running main() from gtest_main.cc
[==========] Running 1 test from 1 test case.
[----------] Global test environment set-up.
[----------] 1 test from stanMcmcUtil
[ RUN ] stanMcmcUtil.headerParses
[ OK ] stanMcmcUtil.headerParses (0 ms)
[----------] 1 test from stanMcmcUtil (0 ms total)

[----------] Global test environment tear-down
[==========] 1 test from 1 test case ran. (0 ms total)
[ PASSED ] 1 test.
Running main() from gtest_main.cc
[==========] Running 1 test from 1 test case.
[----------] Global test environment set-up.
[----------] 1 test from stanMemoryStackAlloc
[ RUN ] stanMemoryStackAlloc.headerParses
[ OK ] stanMemoryStackAlloc.headerParses (0 ms)
[----------] 1 test from stanMemoryStackAlloc (0 ms total)

[----------] Global test environment tear-down
[==========] 1 test from 1 test case ran. (0 ms total)
[ PASSED ] 1 test.
------------------------------------------------------------
------------------------------------------------------------
test/file_includes/stan_memory.exe --gtest_output="xml:test/file_includes/stan_memory.xml";
------------------------------------------------------------
test/file_includes/stan_meta.exe --gtest_output="xml:test/file_includes/stan_meta.xml";
test/file_includes/stan_meta_traits.exe --gtest_output="xml:test/file_includes/stan_meta_traits.xml";
g++ -I src -I lib/eigen_3.1.1 -I lib/boost_1.51.0 -O3 -Wall -Wno-unused-function -Wno-uninitialized -c -DGTEST_HAS_PTHREAD=0 -I lib/gtest_1.6.0/include -I lib/gtest_1.6.0 src/test/file_includes/stan_model_model_header_test.cpp -o test/file_includes/stan_model_model_header.o
internal error in mingw32_gt_pch_use_address, at config/i386/host-mingw32.c:171: MapViewOfFileEx: Attempt to access invalid address.

Running main() from gtest_main.cc
[==========] Running 1 test from 1 test case.
[----------] Global test environment set-up.
[----------] 1 test from stanHpp
[ RUN ] stanHpp.parses
[ OK ] stanHpp.parses (0 ms)
[----------] 1 test from stanHpp (0 ms total)

[----------] Global test environment tear-down
[==========] 1 test from 1 test case ran. (0 ms total)
[ PASSED ] 1 test.
Running main() from gtest_main.cc
[==========] Running 1 test from 1 test case.
[----------] Global test environment set-up.
[----------] 1 test from stanMetaTraits
[ RUN ] stanMetaTraits.headerParses
[ OK ] stanMetaTraits.headerParses (0 ms)
[----------] 1 test from stanMetaTraits (0 ms total)

[----------] Global test environment tear-down
[==========] 1 test from 1 test case ran. (0 ms total)
[ PASSED ] 1 test.
Running main() from gtest_main.cc
[==========] Running 1 test from 1 test case.
[----------] Global test environment set-up.
[----------] 1 test from stanMemory
[ RUN ] stanMemory.headerParses
[ OK ] stanMemory.headerParses (0 ms)
[----------] 1 test from stanMemory (0 ms total)

[----------] Global test environment tear-down
[==========] 1 test from 1 test case ran. (0 ms total)
[ PASSED ] 1 test.
------------------------------------------------------------
test/file_includes/stan_model_prob_grad_ad.exe --gtest_output="xml:test/file_includes/stan_model_prob_grad_ad.xml";
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test/file_includes/stan_model_prob_grad.exe --gtest_output="xml:test/file_includes/stan_model_prob_grad.xml";
------------------------------------------------------------
test/file_includes/stan_model_stanc_model.exe --gtest_output="xml:test/file_includes/stan_model_stanc_model.xml";
Running main() from gtest_main.cc
[==========] Running 1 test from 1 test case.
[----------] Global test environment set-up.
[----------] 1 test from stanModelStancModel
[ RUN ] stanModelStancModel.parses
[ OK ] stanModelStancModel.parses (0 ms)
[----------] 1 test from stanModelStancModel (0 ms total)

[----------] Global test environment tear-down
[==========] 1 test from 1 test case ran. (0 ms total)
[ PASSED ] 1 test.
Running main() from gtest_main.cc
[==========] Running 1 test from 1 test case.
[----------] Global test environment set-up.
[----------] 1 test from stanModelProbGradAd
[ RUN ] stanModelProbGradAd.headerParses
[ OK ] stanModelProbGradAd.headerParses (0 ms)
[----------] 1 test from stanModelProbGradAd (0 ms total)

[----------] Global test environment tear-down
[==========] 1 test from 1 test case ran. (0 ms total)
[ PASSED ] 1 test.
Running main() from gtest_main.cc
[==========] Running 1 test from 1 test case.
[----------] Global test environment set-up.
[----------] 1 test from stanModelProbGrad
[ RUN ] stanModelProbGrad.headerParses
[ OK ] stanModelProbGrad.headerParses (0 ms)
[----------] 1 test from stanModelProbGrad (0 ms total)

[----------] Global test environment tear-down
[==========] 1 test from 1 test case ran. (0 ms total)
[ PASSED ] 1 test.
------------------------------------------------------------
test/file_includes/stan_model.exe --gtest_output="xml:test/file_includes/stan_model.xml";
------------------------------------------------------------
test/file_includes/stan_prob_autocorrelation.exe --gtest_output="xml:test/file_includes/stan_prob_autocorrelation.xml";
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test/file_includes/stan_prob_constants.exe --gtest_output="xml:test/file_includes/stan_prob_constants.xml";
make: *** [test/file_includes/stan_model_model_header.o] Error 1
make: *** Waiting for unfinished jobs....
Running main() from gtest_main.cc
[==========] Running 1 test from 1 test case.
[----------] Global test environment set-up.
[----------] 1 test from stanProbConstants
[ RUN ] stanProbConstants.headerParses
[ OK ] stanProbConstants.headerParses (0 ms)
[----------] 1 test from stanProbConstants (0 ms total)

[----------] Global test environment tear-down
[==========] 1 test from 1 test case ran. (0 ms total)
[ PASSED ] 1 test.
Running main() from gtest_main.cc
[==========] Running 1 test from 1 test case.
[----------] Global test environment set-up.
[----------] 1 test from stanProbAutocorrelation
[ RUN ] stanProbAutocorrelation.headerParses
[ OK ] stanProbAutocorrelation.headerParses (0 ms)
[----------] 1 test from stanProbAutocorrelation (0 ms total)

[----------] Global test environment tear-down
Running main() from gtest_main.cc
[==========] Running 1 test from 1 test case.
[----------] Global test environment set-up.
[----------] 1 test from stanModel
[ RUN ] stanModel.headerParses
[ OK ] stanModel.headerParses (0 ms)
[----------] 1 test from stanModel (0 ms total)

[----------] Global test environment tear-down
[==========] 1 test from 1 test case ran. (0 ms total)
[ PASSED ] 1 test.
[==========] 1 test from 1 test case ran. (0 ms total)
[ PASSED ] 1 test.

<http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/ws/>exit> 2
Build step 'Execute Windows batch command' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
Recording test results

[mc.sta...@gmail.com]

See <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/1652/>