Build failed in Jenkins: Stan Unit Tests #669

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mc.sta...@gmail.com

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Apr 3, 2013, 1:13:11 PM4/3/13
to stan-b...@googlegroups.com
See <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/669/changes>

Changes:

[li.peter94] uncommented hypergeometric, exp mod normal, skew normal, and gumbel rng test

------------------------------------------
[...truncated 4851 lines...]
Output file=src/test/gm/model_specs/compiled/function_signatures_inv_chi_square.cpp
Model name=function_signatures_inv_gamma_model
Input file=src/test/gm/model_specs/compiled/function_signatures_inv_gamma.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_inv_gamma.cpp

--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_logistic.stan --o=src/test/gm/model_specs/compiled/function_signatures_logistic.cpp
Model name=function_signatures_logistic_model
Input file=src/test/gm/model_specs/compiled/function_signatures_logistic.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_logistic.cpp

--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_lognormal.stan --o=src/test/gm/model_specs/compiled/function_signatures_lognormal.cpp
Model name=function_signatures_lognormal_model
Input file=src/test/gm/model_specs/compiled/function_signatures_lognormal.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_lognormal.cpp

--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_multinomial.stan --o=src/test/gm/model_specs/compiled/function_signatures_multinomial.cpp
Model name=function_signatures_multinomial_model
Input file=src/test/gm/model_specs/compiled/function_signatures_multinomial.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_multinomial.cpp

--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_neg_binomial.stan --o=src/test/gm/model_specs/compiled/function_signatures_neg_binomial.cpp
Model name=function_signatures_neg_binomial_model
Input file=src/test/gm/model_specs/compiled/function_signatures_neg_binomial.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_neg_binomial.cpp


--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_normal.stan --o=src/test/gm/model_specs/compiled/function_signatures_normal.cpp
--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_ordered_logistic.stan --o=src/test/gm/model_specs/compiled/function_signatures_ordered_logistic.cpp
Model name=function_signatures_normal_model
Input file=src/test/gm/model_specs/compiled/function_signatures_normal.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_normal.cpp
Model name=function_signatures_ordered_logistic_model
Input file=src/test/gm/model_specs/compiled/function_signatures_ordered_logistic.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_ordered_logistic.cpp

--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_pareto.stan --o=src/test/gm/model_specs/compiled/function_signatures_pareto.cpp
Model name=function_signatures_pareto_model
Input file=src/test/gm/model_specs/compiled/function_signatures_pareto.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_pareto.cpp

--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_poisson.stan --o=src/test/gm/model_specs/compiled/function_signatures_poisson.cpp
Model name=function_signatures_poisson_model
Input file=src/test/gm/model_specs/compiled/function_signatures_poisson.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_poisson.cpp

--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_rep.stan --o=src/test/gm/model_specs/compiled/function_signatures_rep.cpp

Model name=function_signatures_rep_model
Input file=src/test/gm/model_specs/compiled/function_signatures_rep.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_rep.cpp
--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_rep_param.stan --o=src/test/gm/model_specs/compiled/function_signatures_rep_param.cpp
Model name=function_signatures_rep_param_model
Input file=src/test/gm/model_specs/compiled/function_signatures_rep_param.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_rep_param.cpp

--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_scaled_inv_chi_square.stan --o=src/test/gm/model_specs/compiled/function_signatures_scaled_inv_chi_square.cpp

Model name=function_signatures_scaled_inv_chi_square_model
Input file=src/test/gm/model_specs/compiled/function_signatures_scaled_inv_chi_square.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_scaled_inv_chi_square.cpp
--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_student_t_0.stan --o=src/test/gm/model_specs/compiled/function_signatures_student_t_0.cpp
Model name=function_signatures_student_t_0_model
Input file=src/test/gm/model_specs/compiled/function_signatures_student_t_0.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_student_t_0.cpp

--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_student_t_1.stan --o=src/test/gm/model_specs/compiled/function_signatures_student_t_1.cpp
Model name=function_signatures_student_t_1_model
Input file=src/test/gm/model_specs/compiled/function_signatures_student_t_1.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_student_t_1.cpp

--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_student_t_2.stan --o=src/test/gm/model_specs/compiled/function_signatures_student_t_2.cpp
Model name=function_signatures_student_t_2_model
Input file=src/test/gm/model_specs/compiled/function_signatures_student_t_2.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_student_t_2.cpp

--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_student_t_3.stan --o=src/test/gm/model_specs/compiled/function_signatures_student_t_3.cpp
Model name=function_signatures_student_t_3_model
Input file=src/test/gm/model_specs/compiled/function_signatures_student_t_3.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_student_t_3.cpp

--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_uniform.stan --o=src/test/gm/model_specs/compiled/function_signatures_uniform.cpp
Model name=function_signatures_uniform_model
Input file=src/test/gm/model_specs/compiled/function_signatures_uniform.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_uniform.cpp

--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_weibull.stan --o=src/test/gm/model_specs/compiled/function_signatures_weibull.cpp
Model name=function_signatures_weibull_model
Input file=src/test/gm/model_specs/compiled/function_signatures_weibull.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_weibull.cpp

--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/illegal_generated_quantities.stan --o=src/test/gm/model_specs/compiled/illegal_generated_quantities.cpp
Model name=illegal_generated_quantities_model
Input file=src/test/gm/model_specs/compiled/illegal_generated_quantities.stan
Output file=src/test/gm/model_specs/compiled/illegal_generated_quantities.cpp


--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/illegal_transformed_data.stan --o=src/test/gm/model_specs/compiled/illegal_transformed_data.cpp
--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/illegal_transformed_parameters.stan --o=src/test/gm/model_specs/compiled/illegal_transformed_parameters.cpp
Model name=illegal_transformed_data_model
Input file=src/test/gm/model_specs/compiled/illegal_transformed_data.stan
Output file=src/test/gm/model_specs/compiled/illegal_transformed_data.cpp
Model name=illegal_transformed_parameters_model
Input file=src/test/gm/model_specs/compiled/illegal_transformed_parameters.stan
Output file=src/test/gm/model_specs/compiled/illegal_transformed_parameters.cpp


--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/mat_assign.stan --o=src/test/gm/model_specs/compiled/mat_assign.cpp
--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/print_chars.stan --o=src/test/gm/model_specs/compiled/print_chars.cpp
Model name=mat_assign_model
Input file=src/test/gm/model_specs/compiled/mat_assign.stan
Output file=src/test/gm/model_specs/compiled/mat_assign.cpp
Model name=print_chars_model
Input file=src/test/gm/model_specs/compiled/print_chars.stan
Output file=src/test/gm/model_specs/compiled/print_chars.cpp

------------------------------------------------------------
test/gm/parser.exe --gtest_output="xml:test/gm/parser.xml";
--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/rngs.stan --o=src/test/gm/model_specs/compiled/rngs.cpp
Model name=rngs_model
Input file=src/test/gm/model_specs/compiled/rngs.stan
Output file=src/test/gm/model_specs/compiled/rngs.cpp

EXPECTATION FAILURE LOCATION: file=src/test/gm/model_specs/compiled/rngs.stan; line=23, column=33

n <- hypergeometric_rng(5,4,9);
^-- here


DIAGNOSTIC(S) FROM PARSER:
no matches for function name="hypergeometric_rng"
arg 0 type=int
arg 1 type=int
arg 2 type=int
available function signatures for hypergeometric_rng:
expression is ill formed
Parser expecting: <eps>

Execute "stanc --help" for more information
make: *** [src/test/gm/model_specs/compiled/rngs.cpp] Error 127
make: *** Waiting for unfinished jobs....
Running main() from gtest_main.cc
[==========] Running 36 tests from 1 test case.
[----------] Global test environment set-up.
[----------] 36 tests from gm_parser
[ RUN ] gm_parser.eight_schools
[ OK ] gm_parser.eight_schools (15 ms)
[ RUN ] gm_parser.bugs_1_kidney
[ OK ] gm_parser.bugs_1_kidney (78 ms)
[ RUN ] gm_parser.bugs_1_mice
[ OK ] gm_parser.bugs_1_mice (47 ms)
[ RUN ] gm_parser.bugs_1_oxford
[ OK ] gm_parser.bugs_1_oxford (78 ms)
[ RUN ] gm_parser.bugs_1_rats
[ OK ] gm_parser.bugs_1_rats (31 ms)
[ RUN ] gm_parser.bugs_1_salm
[ OK ] gm_parser.bugs_1_salm (47 ms)
[ RUN ] gm_parser.bugs_1_seeds
[ OK ] gm_parser.bugs_1_seeds (47 ms)
[ RUN ] gm_parser.bugs_1_surgical
[ OK ] gm_parser.bugs_1_surgical (15 ms)
[ RUN ] gm_parser.bugs_2_beetles_cloglog
[ OK ] gm_parser.bugs_2_beetles_cloglog (47 ms)
[ RUN ] gm_parser.bugs_2_beetles_logit
[ OK ] gm_parser.bugs_2_beetles_logit (47 ms)
[ RUN ] gm_parser.bugs_2_beetles_probit
[ OK ] gm_parser.bugs_2_beetles_probit (31 ms)
[ RUN ] gm_parser.bugs_2_birats
[ OK ] gm_parser.bugs_2_birats (47 ms)
[ RUN ] gm_parser.bugs_2_dugongs
[ OK ] gm_parser.bugs_2_dugongs (31 ms)
[ RUN ] gm_parser.bugs_2_eyes
[ OK ] gm_parser.bugs_2_eyes (47 ms)
[ RUN ] gm_parser.bugs_2_ice
[ OK ] gm_parser.bugs_2_ice (47 ms)
[ RUN ] gm_parser.good_trunc
[ OK ] gm_parser.good_trunc (15 ms)
[ RUN ] gm_parser.good_vec_constraints
[ OK ] gm_parser.good_vec_constraints (16 ms)
[ RUN ] gm_parser.good_const
[ OK ] gm_parser.good_const (0 ms)
[ RUN ] gm_parser.good_matrix_ops
[ OK ] gm_parser.good_matrix_ops (16 ms)
[ RUN ] gm_parser.good_funs
[ OK ] gm_parser.good_funs (0 ms)
[ RUN ] gm_parser.triangle_lp
[ OK ] gm_parser.triangle_lp (15 ms)
[ RUN ] gm_parser.good_vars
[ OK ] gm_parser.good_vars (47 ms)
[ RUN ] gm_parser.good_intercept_var
[ OK ] gm_parser.good_intercept_var (0 ms)
[ RUN ] gm_parser.good_cov
[ OK ] gm_parser.good_cov (16 ms)
[ RUN ] gm_parser.parsable_test_bad1
[ OK ] gm_parser.parsable_test_bad1 (0 ms)
[ RUN ] gm_parser.parsable_test_bad2
[ OK ] gm_parser.parsable_test_bad2 (0 ms)
[ RUN ] gm_parser.parsable_test_bad3
[ OK ] gm_parser.parsable_test_bad3 (15 ms)
[ RUN ] gm_parser.parsable_test_bad4
[ OK ] gm_parser.parsable_test_bad4 (0 ms)
[ RUN ] gm_parser.parsable_test_bad6
[ OK ] gm_parser.parsable_test_bad6 (0 ms)
[ RUN ] gm_parser.parsable_test_bad7
[ OK ] gm_parser.parsable_test_bad7 (0 ms)
[ RUN ] gm_parser.parsable_test_bad8
[ OK ] gm_parser.parsable_test_bad8 (16 ms)
[ RUN ] gm_parser.parsable_test_bad9
[ OK ] gm_parser.parsable_test_bad9 (0 ms)
[ RUN ] gm_parser.parsable_test_bad10
[ OK ] gm_parser.parsable_test_bad10 (0 ms)
[ RUN ] gm_parser.parsable_test_bad11
[ OK ] gm_parser.parsable_test_bad11 (0 ms)
[ RUN ] gm_parser.parsable_test_bad_trunc
[ OK ] gm_parser.parsable_test_bad_trunc (31 ms)
[ RUN ] gm_parser.function_signatures
[ OK ] gm_parser.function_signatures (39343 ms)
[----------] 36 tests from gm_parser (40185 ms total)

[----------] Global test environment tear-down
[==========] 36 tests from 1 test case ran. (40185 ms total)
[ PASSED ] 36 tests.

<http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/ws/>exit> 2
Build step 'Execute Windows batch command' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
Recording test results

mc.sta...@gmail.com

unread,
Apr 3, 2013, 1:30:37 PM4/3/13
to stan-b...@googlegroups.com
See <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/670/changes>

Changes:

[li.peter94] added rng for categorical, ordered logistic, neg binomial, poisson, and multinomial to doc

------------------------------------------
[...truncated 4892 lines...]
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_pareto.stan --o=src/test/gm/model_specs/compiled/function_signatures_pareto.cpp
Model name=function_signatures_pareto_model
Input file=src/test/gm/model_specs/compiled/function_signatures_pareto.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_pareto.cpp

--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_poisson.stan --o=src/test/gm/model_specs/compiled/function_signatures_poisson.cpp
Model name=function_signatures_poisson_model
Input file=src/test/gm/model_specs/compiled/function_signatures_poisson.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_poisson.cpp

--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_rep.stan --o=src/test/gm/model_specs/compiled/function_signatures_rep.cpp
Model name=function_signatures_rep_model
Input file=src/test/gm/model_specs/compiled/function_signatures_rep.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_rep.cpp


--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_scaled_inv_chi_square.stan --o=src/test/gm/model_specs/compiled/function_signatures_scaled_inv_chi_square.cpp
--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_rep_param.stan --o=src/test/gm/model_specs/compiled/function_signatures_rep_param.cpp
Model name=function_signatures_scaled_inv_chi_square_model
Input file=src/test/gm/model_specs/compiled/function_signatures_scaled_inv_chi_square.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_scaled_inv_chi_square.cpp
Model name=function_signatures_rep_param_model
Input file=src/test/gm/model_specs/compiled/function_signatures_rep_param.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_rep_param.cpp

--- Translating Stan graphical model to C++ code ---
--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/illegal_transformed_data.stan --o=src/test/gm/model_specs/compiled/illegal_transformed_data.cpp
Model name=illegal_generated_quantities_model
Input file=src/test/gm/model_specs/compiled/illegal_generated_quantities.stan
Output file=src/test/gm/model_specs/compiled/illegal_generated_quantities.cpp
Model name=illegal_transformed_data_model
Input file=src/test/gm/model_specs/compiled/illegal_transformed_data.stan
Output file=src/test/gm/model_specs/compiled/illegal_transformed_data.cpp


--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/illegal_transformed_parameters.stan --o=src/test/gm/model_specs/compiled/illegal_transformed_parameters.cpp

Model name=illegal_transformed_parameters_model
Input file=src/test/gm/model_specs/compiled/illegal_transformed_parameters.stan
Output file=src/test/gm/model_specs/compiled/illegal_transformed_parameters.cpp
--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/mat_assign.stan --o=src/test/gm/model_specs/compiled/mat_assign.cpp
--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/print_chars.stan --o=src/test/gm/model_specs/compiled/print_chars.cpp
Model name=mat_assign_model
Input file=src/test/gm/model_specs/compiled/mat_assign.stan
Output file=src/test/gm/model_specs/compiled/mat_assign.cpp
Model name=print_chars_model
Input file=src/test/gm/model_specs/compiled/print_chars.stan
Output file=src/test/gm/model_specs/compiled/print_chars.cpp

------------------------------------------------------------
test/gm/parser.exe --gtest_output="xml:test/gm/parser.xml";
------------------------------------------------------------
--- Translating Stan graphical model to C++ code ---
test/io/cmd_line.exe --gtest_output="xml:test/io/cmd_line.xml";
bin/stanc.exe src/test/gm/model_specs/compiled/rngs.stan --o=src/test/gm/model_specs/compiled/rngs.cpp
------------------------------------------------------------
test/io/csv_writer.exe --gtest_output="xml:test/io/csv_writer.xml";
Model name=rngs_model
Input file=src/test/gm/model_specs/compiled/rngs.stan
Output file=src/test/gm/model_specs/compiled/rngs.cpp

EXPECTATION FAILURE LOCATION: file=src/test/gm/model_specs/compiled/rngs.stan; line=23, column=33

n <- hypergeometric_rng(5,4,9);
^-- here


DIAGNOSTIC(S) FROM PARSER:
no matches for function name="hypergeometric_rng"
arg 0 type=int
arg 1 type=int
arg 2 type=int
available function signatures for hypergeometric_rng:
expression is ill formed
Parser expecting: <eps>

Execute "stanc --help" for more information
make: *** [src/test/gm/model_specs/compiled/rngs.cpp] Error 127
make: *** Waiting for unfinished jobs....
Running main() from gtest_main.cc
[==========] Running 3 tests from 1 test case.
[----------] Global test environment set-up.
[----------] 3 tests from io_cmd_line
[ RUN ] io_cmd_line.cmd_line_0
[ OK ] io_cmd_line.cmd_line_0 (0 ms)
[ RUN ] io_cmd_line.cmd_line_string
[ OK ] io_cmd_line.cmd_line_string (0 ms)
[ RUN ] io_cmd_line.cmd_line_int
[ OK ] io_cmd_line.cmd_line_int (0 ms)
[----------] 3 tests from io_cmd_line (0 ms total)

[----------] Global test environment tear-down
[==========] 3 tests from 1 test case ran. (0 ms total)
[ PASSED ] 3 tests.
Running main() from gtest_main.cc
[==========] Running 7 tests from 1 test case.
[----------] Global test environment set-up.
[----------] 7 tests from io_csv_writer
[ RUN ] io_csv_writer.csv_writer_int
[ OK ] io_csv_writer.csv_writer_int (0 ms)
[ RUN ] io_csv_writer.csv_writer_double
[ OK ] io_csv_writer.csv_writer_double (0 ms)
[ RUN ] io_csv_writer.csv_writer_vector
[ OK ] io_csv_writer.csv_writer_vector (0 ms)
[ RUN ] io_csv_writer.csv_writer_row_vector
[ OK ] io_csv_writer.csv_writer_row_vector (0 ms)
[ RUN ] io_csv_writer.csv_writer_matrix
[ OK ] io_csv_writer.csv_writer_matrix (0 ms)
[ RUN ] io_csv_writer.csv_writer_matrix_col_major
[ OK ] io_csv_writer.csv_writer_matrix_col_major (0 ms)
[ RUN ] io_csv_writer.csv_writer_strings
[ OK ] io_csv_writer.csv_writer_strings (0 ms)
[----------] 7 tests from io_csv_writer (0 ms total)

[----------] Global test environment tear-down
[==========] 7 tests from 1 test case ran. (0 ms total)
[ PASSED ] 7 tests.
Running main() from gtest_main.cc
[==========] Running 36 tests from 1 test case.
[----------] Global test environment set-up.
[----------] 36 tests from gm_parser
[ RUN ] gm_parser.eight_schools
[ OK ] gm_parser.eight_schools (78 ms)
[ RUN ] gm_parser.bugs_1_kidney
[ OK ] gm_parser.bugs_1_kidney (78 ms)
[ RUN ] gm_parser.bugs_1_mice
[ OK ] gm_parser.bugs_1_mice (32 ms)
[ RUN ] gm_parser.bugs_1_oxford
[ OK ] gm_parser.bugs_1_oxford (62 ms)
[ RUN ] gm_parser.bugs_1_rats
[ OK ] gm_parser.bugs_1_rats (31 ms)
[ RUN ] gm_parser.bugs_1_salm
[ OK ] gm_parser.bugs_1_salm (63 ms)
[ RUN ] gm_parser.bugs_1_seeds
[ OK ] gm_parser.bugs_1_seeds (31 ms)
[ RUN ] gm_parser.bugs_1_surgical
[ OK ] gm_parser.bugs_1_surgical (31 ms)
[ RUN ] gm_parser.bugs_2_beetles_cloglog
[ OK ] gm_parser.bugs_2_beetles_cloglog (31 ms)
[ RUN ] gm_parser.bugs_2_beetles_logit
[ OK ] gm_parser.bugs_2_beetles_logit (31 ms)
[ RUN ] gm_parser.bugs_2_beetles_probit
[ OK ] gm_parser.bugs_2_beetles_probit (47 ms)
[ RUN ] gm_parser.bugs_2_birats
[ OK ] gm_parser.bugs_2_birats (47 ms)
[ RUN ] gm_parser.bugs_2_dugongs
[ OK ] gm_parser.bugs_2_dugongs (31 ms)
[ RUN ] gm_parser.bugs_2_eyes
[ OK ] gm_parser.bugs_2_eyes (47 ms)
[ RUN ] gm_parser.bugs_2_ice
[ OK ] gm_parser.bugs_2_ice (47 ms)
[ RUN ] gm_parser.good_trunc
[ OK ] gm_parser.good_trunc (31 ms)
[ RUN ] gm_parser.good_vec_constraints
[ OK ] gm_parser.good_vec_constraints (16 ms)
[ RUN ] gm_parser.good_const
[ OK ] gm_parser.good_const (0 ms)
[ RUN ] gm_parser.good_matrix_ops
[ OK ] gm_parser.good_matrix_ops (15 ms)
[ RUN ] gm_parser.good_funs
[ OK ] gm_parser.good_funs (0 ms)
[ RUN ] gm_parser.triangle_lp
[ OK ] gm_parser.triangle_lp (16 ms)
[ RUN ] gm_parser.good_vars
[ OK ] gm_parser.good_vars (47 ms)
[ RUN ] gm_parser.good_intercept_var
[ OK ] gm_parser.good_intercept_var (15 ms)
[ RUN ] gm_parser.good_cov
[ OK ] gm_parser.good_cov (16 ms)
[ RUN ] gm_parser.parsable_test_bad1
[ OK ] gm_parser.parsable_test_bad1 (0 ms)
[ RUN ] gm_parser.parsable_test_bad2
[ OK ] gm_parser.parsable_test_bad2 (0 ms)
[ RUN ] gm_parser.parsable_test_bad3
[ OK ] gm_parser.parsable_test_bad3 (15 ms)
[ RUN ] gm_parser.parsable_test_bad4
[ OK ] gm_parser.parsable_test_bad4 (0 ms)
[ RUN ] gm_parser.parsable_test_bad6
[ OK ] gm_parser.parsable_test_bad6 (16 ms)
[ RUN ] gm_parser.parsable_test_bad7
[ OK ] gm_parser.parsable_test_bad7 (0 ms)
[ RUN ] gm_parser.parsable_test_bad8
[ OK ] gm_parser.parsable_test_bad8 (0 ms)
[ RUN ] gm_parser.parsable_test_bad9
[ OK ] gm_parser.parsable_test_bad9 (16 ms)
[ RUN ] gm_parser.parsable_test_bad10
[ OK ] gm_parser.parsable_test_bad10 (0 ms)
[ RUN ] gm_parser.parsable_test_bad11
[ OK ] gm_parser.parsable_test_bad11 (0 ms)
[ RUN ] gm_parser.parsable_test_bad_trunc
[ OK ] gm_parser.parsable_test_bad_trunc (31 ms)
[ RUN ] gm_parser.function_signatures
[ OK ] gm_parser.function_signatures (49249 ms)
[----------] 36 tests from gm_parser (50170 ms total)

[----------] Global test environment tear-down
[==========] 36 tests from 1 test case ran. (50170 ms total)

mc.sta...@gmail.com

unread,
Apr 3, 2013, 1:47:13 PM4/3/13
to stan-b...@googlegroups.com
See <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/671/changes>

Changes:

[li.peter94] added rng for normal, exp mod normal, skew normal to doc

------------------------------------------
[...truncated 4851 lines...]
Model name=function_signatures_inv_gamma_model
Input file=src/test/gm/model_specs/compiled/function_signatures_inv_gamma.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_inv_gamma.cpp

--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_logistic.stan --o=src/test/gm/model_specs/compiled/function_signatures_logistic.cpp

Model name=function_signatures_logistic_model
Input file=src/test/gm/model_specs/compiled/function_signatures_logistic.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_logistic.cpp
--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_lognormal.stan --o=src/test/gm/model_specs/compiled/function_signatures_lognormal.cpp
Model name=function_signatures_lognormal_model
Input file=src/test/gm/model_specs/compiled/function_signatures_lognormal.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_lognormal.cpp

--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_multinomial.stan --o=src/test/gm/model_specs/compiled/function_signatures_multinomial.cpp
Model name=function_signatures_multinomial_model
Input file=src/test/gm/model_specs/compiled/function_signatures_multinomial.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_multinomial.cpp


--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_neg_binomial.stan --o=src/test/gm/model_specs/compiled/function_signatures_neg_binomial.cpp
Model name=function_signatures_neg_binomial_model
Input file=src/test/gm/model_specs/compiled/function_signatures_neg_binomial.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_neg_binomial.cpp
--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_normal.stan --o=src/test/gm/model_specs/compiled/function_signatures_normal.cpp
Model name=function_signatures_normal_model
Input file=src/test/gm/model_specs/compiled/function_signatures_normal.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_normal.cpp

--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_ordered_logistic.stan --o=src/test/gm/model_specs/compiled/function_signatures_ordered_logistic.cpp

Model name=function_signatures_ordered_logistic_model
Input file=src/test/gm/model_specs/compiled/function_signatures_ordered_logistic.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_ordered_logistic.cpp

--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_pareto.stan --o=src/test/gm/model_specs/compiled/function_signatures_pareto.cpp
--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_poisson.stan --o=src/test/gm/model_specs/compiled/function_signatures_poisson.cpp
Model name=function_signatures_pareto_model
Input file=src/test/gm/model_specs/compiled/function_signatures_pareto.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_pareto.cpp

Model name=function_signatures_poisson_model
Input file=src/test/gm/model_specs/compiled/function_signatures_poisson.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_poisson.cpp

--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_rep.stan --o=src/test/gm/model_specs/compiled/function_signatures_rep.cpp
Model name=function_signatures_rep_model
Input file=src/test/gm/model_specs/compiled/function_signatures_rep.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_rep.cpp
--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_rep_param.stan --o=src/test/gm/model_specs/compiled/function_signatures_rep_param.cpp
Model name=function_signatures_rep_param_model
Input file=src/test/gm/model_specs/compiled/function_signatures_rep_param.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_rep_param.cpp

--- Translating Stan graphical model to C++ code ---

bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_scaled_inv_chi_square.stan --o=src/test/gm/model_specs/compiled/function_signatures_scaled_inv_chi_square.cpp
Model name=function_signatures_scaled_inv_chi_square_model
Input file=src/test/gm/model_specs/compiled/function_signatures_scaled_inv_chi_square.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_scaled_inv_chi_square.cpp
bin/stanc.exe src/test/gm/model_specs/compiled/illegal_generated_quantities.stan --o=src/test/gm/model_specs/compiled/illegal_generated_quantities.cpp
Model name=function_signatures_weibull_model
Input file=src/test/gm/model_specs/compiled/function_signatures_weibull.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_weibull.cpp
Model name=illegal_generated_quantities_model
Input file=src/test/gm/model_specs/compiled/illegal_generated_quantities.stan
Output file=src/test/gm/model_specs/compiled/illegal_generated_quantities.cpp

--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/illegal_transformed_data.stan --o=src/test/gm/model_specs/compiled/illegal_transformed_data.cpp
Model name=illegal_transformed_data_model
Input file=src/test/gm/model_specs/compiled/illegal_transformed_data.stan
Output file=src/test/gm/model_specs/compiled/illegal_transformed_data.cpp

--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/illegal_transformed_parameters.stan --o=src/test/gm/model_specs/compiled/illegal_transformed_parameters.cpp
Model name=illegal_transformed_parameters_model
Input file=src/test/gm/model_specs/compiled/illegal_transformed_parameters.stan
Output file=src/test/gm/model_specs/compiled/illegal_transformed_parameters.cpp


--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/mat_assign.stan --o=src/test/gm/model_specs/compiled/mat_assign.cpp
Model name=mat_assign_model
Input file=src/test/gm/model_specs/compiled/mat_assign.stan
Output file=src/test/gm/model_specs/compiled/mat_assign.cpp

--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/print_chars.stan --o=src/test/gm/model_specs/compiled/print_chars.cpp
Model name=print_chars_model
Input file=src/test/gm/model_specs/compiled/print_chars.stan
Output file=src/test/gm/model_specs/compiled/print_chars.cpp
--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/rngs.stan --o=src/test/gm/model_specs/compiled/rngs.cpp
Model name=rngs_model
Input file=src/test/gm/model_specs/compiled/rngs.stan
Output file=src/test/gm/model_specs/compiled/rngs.cpp
------------------------------------------------------------

EXPECTATION FAILURE LOCATION: file=src/test/gm/model_specs/compiled/rngs.stan; line=23, column=33

n <- hypergeometric_rng(5,4,9);
^-- here


DIAGNOSTIC(S) FROM PARSER:
no matches for function name="hypergeometric_rng"
arg 0 type=int
arg 1 type=int
arg 2 type=int
available function signatures for hypergeometric_rng:
expression is ill formed
Parser expecting: <eps>

Execute "stanc --help" for more information
make: *** [src/test/gm/model_specs/compiled/rngs.cpp] Error 127
make: *** Waiting for unfinished jobs....
test/gm/parser.exe --gtest_output="xml:test/gm/parser.xml";
make: *** Waiting for unfinished jobs....
Running main() from gtest_main.cc
[==========] Running 36 tests from 1 test case.
[----------] Global test environment set-up.
[----------] 36 tests from gm_parser
[ RUN ] gm_parser.eight_schools
[ OK ] gm_parser.eight_schools (47 ms)
[ RUN ] gm_parser.bugs_1_kidney
[ OK ] gm_parser.bugs_1_kidney (94 ms)
[ RUN ] gm_parser.bugs_1_mice
[ OK ] gm_parser.bugs_1_mice (47 ms)
[ RUN ] gm_parser.bugs_1_oxford
[ OK ] gm_parser.bugs_1_oxford (62 ms)
[ RUN ] gm_parser.bugs_1_rats
[ OK ] gm_parser.bugs_1_rats (47 ms)
[ RUN ] gm_parser.bugs_1_salm
[ OK ] gm_parser.bugs_1_salm (78 ms)
[ RUN ] gm_parser.bugs_1_seeds
[ OK ] gm_parser.bugs_1_seeds (47 ms)
[ RUN ] gm_parser.bugs_1_surgical
[ OK ] gm_parser.bugs_1_surgical (31 ms)
[ RUN ] gm_parser.bugs_2_beetles_cloglog
[ OK ] gm_parser.bugs_2_beetles_cloglog (62 ms)
[ RUN ] gm_parser.bugs_2_beetles_logit
[ OK ] gm_parser.bugs_2_beetles_logit (63 ms)
[ RUN ] gm_parser.bugs_2_beetles_probit
[ OK ] gm_parser.bugs_2_beetles_probit (46 ms)
[ RUN ] gm_parser.bugs_2_birats
[ OK ] gm_parser.bugs_2_birats (47 ms)
[ RUN ] gm_parser.bugs_2_dugongs
[ OK ] gm_parser.bugs_2_dugongs (31 ms)
[ RUN ] gm_parser.bugs_2_eyes
[ OK ] gm_parser.bugs_2_eyes (47 ms)
[ RUN ] gm_parser.bugs_2_ice
[ OK ] gm_parser.bugs_2_ice (47 ms)
[ RUN ] gm_parser.good_trunc
[ OK ] gm_parser.good_trunc (16 ms)
[ RUN ] gm_parser.good_vec_constraints
[ OK ] gm_parser.good_vec_constraints (15 ms)
[ RUN ] gm_parser.good_const
[ OK ] gm_parser.good_const (16 ms)
[ RUN ] gm_parser.good_matrix_ops
[ OK ] gm_parser.good_matrix_ops (15 ms)
[ RUN ] gm_parser.good_funs
[ OK ] gm_parser.good_funs (16 ms)
[ RUN ] gm_parser.triangle_lp
[ OK ] gm_parser.triangle_lp (16 ms)
[ RUN ] gm_parser.good_vars
[ OK ] gm_parser.good_vars (46 ms)
[ RUN ] gm_parser.good_intercept_var
[ OK ] gm_parser.good_intercept_var (0 ms)
[ RUN ] gm_parser.good_cov
[ OK ] gm_parser.good_cov (16 ms)
[ RUN ] gm_parser.parsable_test_bad1
[ OK ] gm_parser.parsable_test_bad1 (0 ms)
[ RUN ] gm_parser.parsable_test_bad2
[ OK ] gm_parser.parsable_test_bad2 (0 ms)
[ RUN ] gm_parser.parsable_test_bad3
[ OK ] gm_parser.parsable_test_bad3 (0 ms)
[ RUN ] gm_parser.parsable_test_bad4
[ OK ] gm_parser.parsable_test_bad4 (16 ms)
[ RUN ] gm_parser.parsable_test_bad6
[ OK ] gm_parser.parsable_test_bad6 (0 ms)
[ RUN ] gm_parser.parsable_test_bad7
[ OK ] gm_parser.parsable_test_bad7 (15 ms)
[ RUN ] gm_parser.parsable_test_bad8
[ OK ] gm_parser.parsable_test_bad8 (0 ms)
[ RUN ] gm_parser.parsable_test_bad9
[ OK ] gm_parser.parsable_test_bad9 (16 ms)
[ RUN ] gm_parser.parsable_test_bad10
[ OK ] gm_parser.parsable_test_bad10 (0 ms)
[ RUN ] gm_parser.parsable_test_bad11
[ OK ] gm_parser.parsable_test_bad11 (0 ms)
[ RUN ] gm_parser.parsable_test_bad_trunc
[ OK ] gm_parser.parsable_test_bad_trunc (15 ms)
[ RUN ] gm_parser.function_signatures
[ OK ] gm_parser.function_signatures (52417 ms)
[----------] 36 tests from gm_parser (53431 ms total)

[----------] Global test environment tear-down
[==========] 36 tests from 1 test case ran. (53431 ms total)

mc.sta...@gmail.com

unread,
Apr 3, 2013, 2:16:02 PM4/3/13
to stan-b...@googlegroups.com
See <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/672/changes>

Changes:

[Daniel Lee] adding point_estimate_newton to help options in command_test
Model name=function_signatures_pareto_model
Input file=src/test/gm/model_specs/compiled/function_signatures_pareto.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_pareto.cpp


--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_poisson.stan --o=src/test/gm/model_specs/compiled/function_signatures_poisson.cpp
--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_rep.stan --o=src/test/gm/model_specs/compiled/function_signatures_rep.cpp
Model name=function_signatures_poisson_model
Input file=src/test/gm/model_specs/compiled/function_signatures_poisson.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_poisson.cpp
Model name=function_signatures_rep_model
Input file=src/test/gm/model_specs/compiled/function_signatures_rep.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_rep.cpp


--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_rep_param.stan --o=src/test/gm/model_specs/compiled/function_signatures_rep_param.cpp
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_weibull.stan --o=src/test/gm/model_specs/compiled/function_signatures_weibull.cpp
Model name=function_signatures_weibull_model
Input file=src/test/gm/model_specs/compiled/function_signatures_weibull.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_weibull.cpp


--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/illegal_generated_quantities.stan --o=src/test/gm/model_specs/compiled/illegal_generated_quantities.cpp
--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/illegal_transformed_data.stan --o=src/test/gm/model_specs/compiled/illegal_transformed_data.cpp
Model name=illegal_generated_quantities_model
Input file=src/test/gm/model_specs/compiled/illegal_generated_quantities.stan
Output file=src/test/gm/model_specs/compiled/illegal_generated_quantities.cpp
Model name=illegal_transformed_data_model
Input file=src/test/gm/model_specs/compiled/illegal_transformed_data.stan
Output file=src/test/gm/model_specs/compiled/illegal_transformed_data.cpp


--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/illegal_transformed_parameters.stan --o=src/test/gm/model_specs/compiled/illegal_transformed_parameters.cpp
--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/mat_assign.stan --o=src/test/gm/model_specs/compiled/mat_assign.cpp
Model name=illegal_transformed_parameters_model
Input file=src/test/gm/model_specs/compiled/illegal_transformed_parameters.stan
Output file=src/test/gm/model_specs/compiled/illegal_transformed_parameters.cpp
Model name=mat_assign_model
Input file=src/test/gm/model_specs/compiled/mat_assign.stan
Output file=src/test/gm/model_specs/compiled/mat_assign.cpp


--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/print_chars.stan --o=src/test/gm/model_specs/compiled/print_chars.cpp
Model name=print_chars_model
Input file=src/test/gm/model_specs/compiled/print_chars.stan
Output file=src/test/gm/model_specs/compiled/print_chars.cpp
--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/rngs.stan --o=src/test/gm/model_specs/compiled/rngs.cpp
Model name=rngs_model
Input file=src/test/gm/model_specs/compiled/rngs.stan
Output file=src/test/gm/model_specs/compiled/rngs.cpp

EXPECTATION FAILURE LOCATION: file=src/test/gm/model_specs/compiled/rngs.stan; line=23, column=33

n <- hypergeometric_rng(5,4,9);
^-- here


DIAGNOSTIC(S) FROM PARSER:
no matches for function name="hypergeometric_rng"
arg 0 type=int
arg 1 type=int
arg 2 type=int
available function signatures for hypergeometric_rng:
expression is ill formed
Parser expecting: <eps>

Execute "stanc --help" for more information
------------------------------------------------------------
make: *** [src/test/gm/model_specs/compiled/rngs.cpp] Error 127
make: *** Waiting for unfinished jobs....
test/gm/parser.exe --gtest_output="xml:test/gm/parser.xml";
make: *** Waiting for unfinished jobs....
Running main() from gtest_main.cc
[==========] Running 36 tests from 1 test case.
[----------] Global test environment set-up.
[----------] 36 tests from gm_parser
[ RUN ] gm_parser.eight_schools
[ OK ] gm_parser.eight_schools (156 ms)
[ RUN ] gm_parser.bugs_1_kidney
[ OK ] gm_parser.bugs_1_kidney (78 ms)
[ RUN ] gm_parser.bugs_1_mice
[ OK ] gm_parser.bugs_1_mice (109 ms)
[ RUN ] gm_parser.bugs_1_oxford
[ OK ] gm_parser.bugs_1_oxford (109 ms)
[ RUN ] gm_parser.bugs_1_rats
[ OK ] gm_parser.bugs_1_rats (266 ms)
[ RUN ] gm_parser.bugs_1_salm
[ OK ] gm_parser.bugs_1_salm (140 ms)
[ RUN ] gm_parser.bugs_1_seeds
[ OK ] gm_parser.bugs_1_seeds (31 ms)
[ RUN ] gm_parser.bugs_1_surgical
[ OK ] gm_parser.bugs_1_surgical (16 ms)
[ RUN ] gm_parser.bugs_2_beetles_cloglog
[ OK ] gm_parser.bugs_2_beetles_cloglog (31 ms)
[ RUN ] gm_parser.bugs_2_beetles_logit
[ OK ] gm_parser.bugs_2_beetles_logit (31 ms)
[ RUN ] gm_parser.bugs_2_beetles_probit
[ OK ] gm_parser.bugs_2_beetles_probit (47 ms)
[ RUN ] gm_parser.bugs_2_birats
[ OK ] gm_parser.bugs_2_birats (47 ms)
[ RUN ] gm_parser.bugs_2_dugongs
[ OK ] gm_parser.bugs_2_dugongs (15 ms)
[ RUN ] gm_parser.bugs_2_eyes
[ OK ] gm_parser.bugs_2_eyes (32 ms)
[ RUN ] gm_parser.bugs_2_ice
[ OK ] gm_parser.bugs_2_ice (46 ms)
[ RUN ] gm_parser.good_trunc
[ OK ] gm_parser.good_trunc (16 ms)
[ RUN ] gm_parser.good_vec_constraints
[ OK ] gm_parser.good_vec_constraints (0 ms)
[ RUN ] gm_parser.good_const
[ OK ] gm_parser.good_const (16 ms)
[ RUN ] gm_parser.good_matrix_ops
[ OK ] gm_parser.good_matrix_ops (15 ms)
[ RUN ] gm_parser.good_funs
[ OK ] gm_parser.good_funs (0 ms)
[ RUN ] gm_parser.triangle_lp
[ OK ] gm_parser.triangle_lp (0 ms)
[ RUN ] gm_parser.good_vars
[ OK ] gm_parser.good_vars (47 ms)
[ RUN ] gm_parser.good_intercept_var
[ OK ] gm_parser.good_intercept_var (0 ms)
[ RUN ] gm_parser.good_cov
[ OK ] gm_parser.good_cov (16 ms)
[ RUN ] gm_parser.parsable_test_bad1
[ OK ] gm_parser.parsable_test_bad1 (0 ms)
[ RUN ] gm_parser.parsable_test_bad2
[ OK ] gm_parser.parsable_test_bad2 (0 ms)
[ RUN ] gm_parser.parsable_test_bad3
[ OK ] gm_parser.parsable_test_bad3 (15 ms)
[ RUN ] gm_parser.parsable_test_bad4
[ OK ] gm_parser.parsable_test_bad4 (0 ms)
[ RUN ] gm_parser.parsable_test_bad6
[ OK ] gm_parser.parsable_test_bad6 (0 ms)
[ RUN ] gm_parser.parsable_test_bad7
[ OK ] gm_parser.parsable_test_bad7 (0 ms)
[ RUN ] gm_parser.parsable_test_bad8
[ OK ] gm_parser.parsable_test_bad8 (16 ms)
[ RUN ] gm_parser.parsable_test_bad9
[ OK ] gm_parser.parsable_test_bad9 (0 ms)
[ RUN ] gm_parser.parsable_test_bad10
[ OK ] gm_parser.parsable_test_bad10 (0 ms)
[ RUN ] gm_parser.parsable_test_bad11
[ OK ] gm_parser.parsable_test_bad11 (0 ms)
[ RUN ] gm_parser.parsable_test_bad_trunc
[ OK ] gm_parser.parsable_test_bad_trunc (31 ms)
[ RUN ] gm_parser.function_signatures
[ OK ] gm_parser.function_signatures (37081 ms)
[----------] 36 tests from gm_parser (38407 ms total)

[----------] Global test environment tear-down
[==========] 36 tests from 1 test case ran. (38407 ms total)

mc.sta...@gmail.com

unread,
Apr 3, 2013, 3:04:48 PM4/3/13
to stan-b...@googlegroups.com
See <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/673/changes>

Changes:

[carp] pulled distributions out of functions in doc

[carp] finished merge of distribution functions in doc

------------------------------------------
[...truncated 4850 lines...]
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_inv_gamma.stan --o=src/test/gm/model_specs/compiled/function_signatures_inv_gamma.cpp
Model name=function_signatures_poisson_model
Input file=src/test/gm/model_specs/compiled/function_signatures_poisson.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_poisson.cpp

--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_rep.stan --o=src/test/gm/model_specs/compiled/function_signatures_rep.cpp
Model name=function_signatures_rep_model
Input file=src/test/gm/model_specs/compiled/function_signatures_rep.stan
Output file=src/test/gm/model_specs/compiled/function_signatures_rep.cpp


--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/function_signatures_rep_param.stan --o=src/test/gm/model_specs/compiled/function_signatures_rep_param.cpp
Model name=illegal_generated_quantities_model
Input file=src/test/gm/model_specs/compiled/illegal_generated_quantities.stan
Output file=src/test/gm/model_specs/compiled/illegal_generated_quantities.cpp


--- Translating Stan graphical model to C++ code ---
--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/illegal_transformed_data.stan --o=src/test/gm/model_specs/compiled/illegal_transformed_data.cpp
bin/stanc.exe src/test/gm/model_specs/compiled/illegal_transformed_parameters.stan --o=src/test/gm/model_specs/compiled/illegal_transformed_parameters.cpp
Model name=illegal_transformed_data_model
Input file=src/test/gm/model_specs/compiled/illegal_transformed_data.stan
Output file=src/test/gm/model_specs/compiled/illegal_transformed_data.cpp
Model name=illegal_transformed_parameters_model
Input file=src/test/gm/model_specs/compiled/illegal_transformed_parameters.stan
Output file=src/test/gm/model_specs/compiled/illegal_transformed_parameters.cpp


--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/mat_assign.stan --o=src/test/gm/model_specs/compiled/mat_assign.cpp
--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/print_chars.stan --o=src/test/gm/model_specs/compiled/print_chars.cpp
Model name=mat_assign_model
Input file=src/test/gm/model_specs/compiled/mat_assign.stan
Output file=src/test/gm/model_specs/compiled/mat_assign.cpp
Model name=print_chars_model
Input file=src/test/gm/model_specs/compiled/print_chars.stan
Output file=src/test/gm/model_specs/compiled/print_chars.cpp

------------------------------------------------------------
test/gm/parser.exe --gtest_output="xml:test/gm/parser.xml";
--- Translating Stan graphical model to C++ code ---
bin/stanc.exe src/test/gm/model_specs/compiled/rngs.stan --o=src/test/gm/model_specs/compiled/rngs.cpp
Model name=rngs_model
Input file=src/test/gm/model_specs/compiled/rngs.stan
Output file=src/test/gm/model_specs/compiled/rngs.cpp

EXPECTATION FAILURE LOCATION: file=src/test/gm/model_specs/compiled/rngs.stan; line=23, column=33

n <- hypergeometric_rng(5,4,9);
^-- here


DIAGNOSTIC(S) FROM PARSER:
no matches for function name="hypergeometric_rng"
arg 0 type=int
arg 1 type=int
arg 2 type=int
available function signatures for hypergeometric_rng:
expression is ill formed
Parser expecting: <eps>

Execute "stanc --help" for more information
make: *** [src/test/gm/model_specs/compiled/rngs.cpp] Error 127
make: *** Waiting for unfinished jobs....
Running main() from gtest_main.cc
[==========] Running 36 tests from 1 test case.
[----------] Global test environment set-up.
[----------] 36 tests from gm_parser
[ RUN ] gm_parser.eight_schools
[ OK ] gm_parser.eight_schools (31 ms)
[ RUN ] gm_parser.bugs_1_kidney
[ OK ] gm_parser.bugs_1_kidney (62 ms)
[ RUN ] gm_parser.bugs_1_mice
[ OK ] gm_parser.bugs_1_mice (31 ms)
[ RUN ] gm_parser.bugs_1_oxford
[ OK ] gm_parser.bugs_1_oxford (32 ms)
[ RUN ] gm_parser.bugs_1_rats
[ OK ] gm_parser.bugs_1_rats (31 ms)
[ RUN ] gm_parser.bugs_1_salm
[ OK ] gm_parser.bugs_1_salm (47 ms)
[ RUN ] gm_parser.bugs_1_seeds
[ OK ] gm_parser.bugs_1_seeds (15 ms)
[ RUN ] gm_parser.bugs_1_surgical
[ OK ] gm_parser.bugs_1_surgical (31 ms)
[ RUN ] gm_parser.bugs_2_beetles_cloglog
[ OK ] gm_parser.bugs_2_beetles_cloglog (32 ms)
[ RUN ] gm_parser.bugs_2_beetles_logit
[ OK ] gm_parser.bugs_2_beetles_logit (31 ms)
[ RUN ] gm_parser.bugs_2_beetles_probit
[ OK ] gm_parser.bugs_2_beetles_probit (31 ms)
[ RUN ] gm_parser.bugs_2_birats
[ OK ] gm_parser.bugs_2_birats (31 ms)
[ RUN ] gm_parser.bugs_2_dugongs
[ OK ] gm_parser.bugs_2_dugongs (16 ms)
[ RUN ] gm_parser.bugs_2_eyes
[ OK ] gm_parser.bugs_2_eyes (31 ms)
[ RUN ] gm_parser.bugs_2_ice
[ OK ] gm_parser.bugs_2_ice (31 ms)
[ RUN ] gm_parser.good_trunc
[ OK ] gm_parser.good_trunc (0 ms)
[ RUN ] gm_parser.good_vec_constraints
[ OK ] gm_parser.good_vec_constraints (16 ms)
[ RUN ] gm_parser.good_const
[ OK ] gm_parser.good_const (15 ms)
[ RUN ] gm_parser.good_matrix_ops
[ OK ] gm_parser.good_matrix_ops (16 ms)
[ RUN ] gm_parser.good_funs
[ OK ] gm_parser.good_funs (0 ms)
[ RUN ] gm_parser.triangle_lp
[ OK ] gm_parser.triangle_lp (0 ms)
[ RUN ] gm_parser.good_vars
[ OK ] gm_parser.good_vars (31 ms)
[ RUN ] gm_parser.good_intercept_var
[ OK ] gm_parser.good_intercept_var (16 ms)
[ RUN ] gm_parser.good_cov
[ OK ] gm_parser.good_cov (0 ms)
[ RUN ] gm_parser.parsable_test_bad1
[ OK ] gm_parser.parsable_test_bad1 (15 ms)
[ RUN ] gm_parser.parsable_test_bad2
[ OK ] gm_parser.parsable_test_bad2 (0 ms)
[ RUN ] gm_parser.parsable_test_bad3
[ OK ] gm_parser.parsable_test_bad3 (0 ms)
[ RUN ] gm_parser.parsable_test_bad4
[ OK ] gm_parser.parsable_test_bad4 (0 ms)
[ RUN ] gm_parser.parsable_test_bad6
[ OK ] gm_parser.parsable_test_bad6 (16 ms)
[ RUN ] gm_parser.parsable_test_bad7
[ OK ] gm_parser.parsable_test_bad7 (0 ms)
[ RUN ] gm_parser.parsable_test_bad8
[ OK ] gm_parser.parsable_test_bad8 (0 ms)
[ RUN ] gm_parser.parsable_test_bad9
[ OK ] gm_parser.parsable_test_bad9 (0 ms)
[ RUN ] gm_parser.parsable_test_bad10
[ OK ] gm_parser.parsable_test_bad10 (16 ms)
[ RUN ] gm_parser.parsable_test_bad11
[ OK ] gm_parser.parsable_test_bad11 (0 ms)
[ RUN ] gm_parser.parsable_test_bad_trunc
[ OK ] gm_parser.parsable_test_bad_trunc (15 ms)
[ RUN ] gm_parser.function_signatures
[ OK ] gm_parser.function_signatures (36863 ms)
[----------] 36 tests from gm_parser (37502 ms total)

[----------] Global test environment tear-down
[==========] 36 tests from 1 test case ran. (37502 ms total)

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See <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/674/>

------------------------------------------
Started by GitHub push by bob-carpenter
Building in workspace <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/ws/>
Checkout:workspace / <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/ws/> - hudson.remoting.LocalChannel@d95e3f3
Using strategy: Default
Last Built Revision: Revision 6d33ced80032a746b7f0eb650ee13f9663b81725 (origin/master)
Fetching changes from 1 remote Git repository
Commencing build of Revision bf440ba963488aa523dc37169863a5b5fdc9bb87 (origin/master)
Checking out Revision bf440ba963488aa523dc37169863a5b5fdc9bb87 (origin/master)
FATAL: Could not checkout bf440ba963488aa523dc37169863a5b5fdc9bb87
hudson.plugins.git.GitException: Could not checkout bf440ba963488aa523dc37169863a5b5fdc9bb87
at org.jenkinsci.plugins.gitclient.JGitAPIImpl.checkout(JGitAPIImpl.java:68)
at hudson.plugins.git.GitAPI.checkout(GitAPI.java:208)
at hudson.plugins.git.GitSCM.checkout(GitSCM.java:1261)
at hudson.plugins.git.GitSCM.access$1200(GitSCM.java:57)
at hudson.plugins.git.GitSCM$4.invoke(GitSCM.java:1220)
at hudson.plugins.git.GitSCM$4.invoke(GitSCM.java:1196)
at hudson.FilePath.act(FilePath.java:865)
at hudson.FilePath.act(FilePath.java:838)
at hudson.plugins.git.GitSCM.checkout(GitSCM.java:1196)
at hudson.model.AbstractProject.checkout(AbstractProject.java:1353)
at hudson.model.AbstractBuild$AbstractBuildExecution.defaultCheckout(AbstractBuild.java:683)
at jenkins.scm.SCMCheckoutStrategy.checkout(SCMCheckoutStrategy.java:88)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:588)
at hudson.model.Run.execute(Run.java:1567)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:46)
at hudson.model.ResourceController.execute(ResourceController.java:88)
at hudson.model.Executor.run(Executor.java:237)
Caused by: org.eclipse.jgit.api.errors.CheckoutConflictException: Checkout conflict with files:
TO-DO.txt
at org.eclipse.jgit.api.CheckoutCommand.call(CheckoutCommand.java:244)
at org.jenkinsci.plugins.gitclient.JGitAPIImpl.checkout(JGitAPIImpl.java:64)
... 16 more
Caused by: org.eclipse.jgit.errors.CheckoutConflictException: Checkout conflict with files:
TO-DO.txt
at org.eclipse.jgit.dircache.DirCacheCheckout.doCheckout(DirCacheCheckout.java:411)
at org.eclipse.jgit.dircache.DirCacheCheckout.checkout(DirCacheCheckout.java:391)
at org.eclipse.jgit.api.CheckoutCommand.call(CheckoutCommand.java:240)
... 17 more

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See <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/675/>

------------------------------------------
Started by GitHub push by syclik
Building in workspace <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/ws/>
Checkout:workspace / <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/ws/> - hudson.remoting.LocalChannel@d95e3f3
Using strategy: Default
Last Built Revision: Revision 6d33ced80032a746b7f0eb650ee13f9663b81725 (origin/master)
Fetching changes from 1 remote Git repository
Commencing build of Revision cad79150bb78e6b2c0e5371c59867ef6e3beafa3 (origin/master)
Checking out Revision cad79150bb78e6b2c0e5371c59867ef6e3beafa3 (origin/master)
FATAL: Could not checkout cad79150bb78e6b2c0e5371c59867ef6e3beafa3
hudson.plugins.git.GitException: Could not checkout cad79150bb78e6b2c0e5371c59867ef6e3beafa3

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Apr 3, 2013, 5:09:37 PM4/3/13
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See <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/676/>

------------------------------------------
Started by user Daniel Lee
Building in workspace <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/ws/>
Checkout:workspace / <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/ws/> - hudson.remoting.LocalChannel@15bda956

mc.sta...@gmail.com

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See <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/677/>

------------------------------------------
Started by GitHub push by bgoodri
Building in workspace <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/ws/>
Checkout:workspace / <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/ws/> - hudson.remoting.LocalChannel@15bda956
Using strategy: Default
Last Built Revision: Revision 6d33ced80032a746b7f0eb650ee13f9663b81725 (origin/master)
Cloning the remote Git repository
Cloning repository https://github.com/stan-dev/stan.git
git --version
git version 1.7.11.msysgit.1
ERROR: Failed to clean the workspace
java.io.IOException: Unable to delete <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/ws/.git/objects/pack/pack-0539d71a27edc1d0ce1edf9c64ccc3c9b312d0b4.pack>
at hudson.Util.deleteFile(Util.java:243)
at hudson.Util.deleteRecursive(Util.java:293)
at hudson.Util.deleteContentsRecursive(Util.java:204)
at hudson.Util.deleteRecursive(Util.java:284)
at hudson.Util.deleteContentsRecursive(Util.java:204)
at hudson.Util.deleteRecursive(Util.java:284)
at hudson.Util.deleteContentsRecursive(Util.java:204)
at hudson.Util.deleteRecursive(Util.java:284)
at hudson.Util.deleteContentsRecursive(Util.java:204)
at org.jenkinsci.plugins.gitclient.CliGitAPIImpl.clone(CliGitAPIImpl.java:191)
at hudson.plugins.git.GitSCM$2.invoke(GitSCM.java:1001)
at hudson.plugins.git.GitSCM$2.invoke(GitSCM.java:942)
at hudson.FilePath.act(FilePath.java:865)
at hudson.FilePath.act(FilePath.java:838)
at hudson.plugins.git.GitSCM.determineRevisionToBuild(GitSCM.java:942)
at hudson.plugins.git.GitSCM.checkout(GitSCM.java:1101)
at hudson.model.AbstractProject.checkout(AbstractProject.java:1353)
at hudson.model.AbstractBuild$AbstractBuildExecution.defaultCheckout(AbstractBuild.java:683)
at jenkins.scm.SCMCheckoutStrategy.checkout(SCMCheckoutStrategy.java:88)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:588)
at hudson.model.Run.execute(Run.java:1567)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:46)
at hudson.model.ResourceController.execute(ResourceController.java:88)
at hudson.model.Executor.run(Executor.java:237)
ERROR: Error cloning remote repo 'origin' : Failed to delete workspace
hudson.plugins.git.GitException: Failed to delete workspace
at org.jenkinsci.plugins.gitclient.CliGitAPIImpl.clone(CliGitAPIImpl.java:194)
at hudson.plugins.git.GitSCM$2.invoke(GitSCM.java:1001)
at hudson.plugins.git.GitSCM$2.invoke(GitSCM.java:942)
at hudson.FilePath.act(FilePath.java:865)
at hudson.FilePath.act(FilePath.java:838)
at hudson.plugins.git.GitSCM.determineRevisionToBuild(GitSCM.java:942)
at hudson.plugins.git.GitSCM.checkout(GitSCM.java:1101)
at hudson.model.AbstractProject.checkout(AbstractProject.java:1353)
at hudson.model.AbstractBuild$AbstractBuildExecution.defaultCheckout(AbstractBuild.java:683)
at jenkins.scm.SCMCheckoutStrategy.checkout(SCMCheckoutStrategy.java:88)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:588)
at hudson.model.Run.execute(Run.java:1567)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:46)
at hudson.model.ResourceController.execute(ResourceController.java:88)
at hudson.model.Executor.run(Executor.java:237)
Caused by: java.io.IOException: Unable to delete <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/ws/.git/objects/pack/pack-0539d71a27edc1d0ce1edf9c64ccc3c9b312d0b4.pack>
at hudson.Util.deleteFile(Util.java:243)
at hudson.Util.deleteRecursive(Util.java:293)
at hudson.Util.deleteContentsRecursive(Util.java:204)
at hudson.Util.deleteRecursive(Util.java:284)
at hudson.Util.deleteContentsRecursive(Util.java:204)
at hudson.Util.deleteRecursive(Util.java:284)
at hudson.Util.deleteContentsRecursive(Util.java:204)
at hudson.Util.deleteRecursive(Util.java:284)
at hudson.Util.deleteContentsRecursive(Util.java:204)
at org.jenkinsci.plugins.gitclient.CliGitAPIImpl.clone(CliGitAPIImpl.java:191)
... 14 more
Trying next repository
ERROR: Could not clone repository
FATAL: Could not clone
hudson.plugins.git.GitException: Could not clone
at hudson.plugins.git.GitSCM$2.invoke(GitSCM.java:1013)
at hudson.plugins.git.GitSCM$2.invoke(GitSCM.java:942)
at hudson.FilePath.act(FilePath.java:865)
at hudson.FilePath.act(FilePath.java:838)
at hudson.plugins.git.GitSCM.determineRevisionToBuild(GitSCM.java:942)
at hudson.plugins.git.GitSCM.checkout(GitSCM.java:1101)

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