Build failed in Jenkins: Stan Unit Tests #1104

[mc.sta...@gmail.com]

See <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/1104/changes>

Changes:

[Daniel Lee] Adding --vanilla flag to Rscript call, removing python and perl dependencies.

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[...truncated 13179 lines...]
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_rayleigh.exe src/test/gm/model_specs/compiled/function_signatures_rayleigh.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_von_mises.exe src/test/gm/model_specs/compiled/function_signatures_von_mises.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_beta_binomial.exe src/test/gm/model_specs/compiled/function_signatures_beta_binomial.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/rngs.exe src/test/gm/model_specs/compiled/rngs.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_weibull.exe src/test/gm/model_specs/compiled/function_signatures_weibull.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_gumbel.exe src/test/gm/model_specs/compiled/function_signatures_gumbel.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_exp_mod_normal_2.exe src/test/gm/model_specs/compiled/function_signatures_exp_mod_normal_2.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_normal.exe src/test/gm/model_specs/compiled/function_signatures_normal.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_binomial.exe src/test/gm/model_specs/compiled/function_signatures_binomial.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_inv_chi_square.exe src/test/gm/model_specs/compiled/function_signatures_inv_chi_square.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_skew_normal_5.exe src/test/gm/model_specs/compiled/function_signatures_skew_normal_5.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_logistic.exe src/test/gm/model_specs/compiled/function_signatures_logistic.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_chi_square.exe src/test/gm/model_specs/compiled/function_signatures_chi_square.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_student_t_6.exe src/test/gm/model_specs/compiled/function_signatures_student_t_6.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/illegal_generated_quantities.exe src/test/gm/model_specs/compiled/illegal_generated_quantities.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_bernoulli.exe src/test/gm/model_specs/compiled/function_signatures_bernoulli.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_student_t_12.exe src/test/gm/model_specs/compiled/function_signatures_student_t_12.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_student_t_14.exe src/test/gm/model_specs/compiled/function_signatures_student_t_14.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_categorical.exe src/test/gm/model_specs/compiled/function_signatures_categorical.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures6.exe src/test/gm/model_specs/compiled/function_signatures6.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_skew_normal_3.exe src/test/gm/model_specs/compiled/function_signatures_skew_normal_3.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_rep.exe src/test/gm/model_specs/compiled/function_signatures_rep.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_skew_normal_0.exe src/test/gm/model_specs/compiled/function_signatures_skew_normal_0.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_beta.exe src/test/gm/model_specs/compiled/function_signatures_beta.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_skew_normal_4.exe src/test/gm/model_specs/compiled/function_signatures_skew_normal_4.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_student_t_4.exe src/test/gm/model_specs/compiled/function_signatures_student_t_4.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/assignment_double_index_lhs.exe src/test/gm/model_specs/compiled/assignment_double_index_lhs.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_uniform.exe src/test/gm/model_specs/compiled/function_signatures_uniform.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_student_t_3.exe src/test/gm/model_specs/compiled/function_signatures_student_t_3.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_hypergeometric.exe src/test/gm/model_specs/compiled/function_signatures_hypergeometric.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_skew_normal_7.exe src/test/gm/model_specs/compiled/function_signatures_skew_normal_7.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_skew_normal_1.exe src/test/gm/model_specs/compiled/function_signatures_skew_normal_1.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_exp_mod_normal_0.exe src/test/gm/model_specs/compiled/function_signatures_exp_mod_normal_0.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_double_exponential.exe src/test/gm/model_specs/compiled/function_signatures_double_exponential.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/assignments_var.exe src/test/gm/model_specs/compiled/assignments_var.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/print_indexing.exe src/test/gm/model_specs/compiled/print_indexing.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/mat_assign.exe src/test/gm/model_specs/compiled/mat_assign.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/mcmc/models/improper.exe src/test/mcmc/models/improper.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o models/command.exe models/command.o -Lbin -lstan -static-libgcc -static-libstdc++

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/arguments/test_model.exe src/test/gm/arguments/test_model.o -Lbin -lstan -static-libgcc -static-libstdc++
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 lib/gtest_1.7.0/src/gtest_main.cc test/gm/command.o -DGTEST_USE_OWN_TR1_TUPLE -DGTEST_HAS_PTHREAD=0 -I lib/gtest_1.7.0/include -I lib/gtest_1.7.0 -o test/gm/command.exe test/libgtest.a -Lbin -lstan -static-libgcc -static-libstdc++ -Lbin -lstanc

--- Linking C++ model ---
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 -o src/test/gm/model_specs/compiled/function_signatures_exp_mod_normal_4.exe src/test/gm/model_specs/compiled/function_signatures_exp_mod_normal_4.o -Lbin -lstan -static-libgcc -static-libstdc++
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 lib/gtest_1.7.0/src/gtest_main.cc test/mcmc/base_hmc.o -DGTEST_USE_OWN_TR1_TUPLE -DGTEST_HAS_PTHREAD=0 -I lib/gtest_1.7.0/include -I lib/gtest_1.7.0 -o test/mcmc/base_hmc.exe test/libgtest.a -Lbin -lstan -static-libgcc -static-libstdc++ -Lbin -lstanc
------------------------------------------------------------
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 lib/gtest_1.7.0/src/gtest_main.cc test/models/command.o -DGTEST_USE_OWN_TR1_TUPLE -DGTEST_HAS_PTHREAD=0 -I lib/gtest_1.7.0/include -I lib/gtest_1.7.0 -o test/models/command.exe test/libgtest.a -Lbin -lstan -static-libgcc -static-libstdc++ -Lbin -lstanc
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 lib/gtest_1.7.0/src/gtest_main.cc test/gm/arguments/argument_configuration.o -DGTEST_USE_OWN_TR1_TUPLE -DGTEST_HAS_PTHREAD=0 -I lib/gtest_1.7.0/include -I lib/gtest_1.7.0 -o test/gm/arguments/argument_configuration.exe test/libgtest.a -Lbin -lstan -static-libgcc -static-libstdc++ -Lbin -lstanc
------------------------------------------------------------
test/gm/command.exe --gtest_output="xml:test/gm/command.xml";
Running main() from gtest_main.cc
[==========] Running 7 tests from 1 test case.
[----------] Global test environment set-up.
[----------] 7 tests from StanGmCommand
[ RUN ] StanGmCommand.zero_init_value_fail
uname: not found
uname: not found
------------------------------------------------------------
test/mcmc/base_hmc.exe --gtest_output="xml:test/mcmc/base_hmc.xml";
Running main() from gtest_main.cc
[==========] Running 4 tests from 1 test case.
[----------] Global test environment set-up.
[----------] 4 tests from McmcBaseHMC
[ RUN ] McmcBaseHMC.point_construction
[ OK ] McmcBaseHMC.point_construction (0 ms)
[ RUN ] McmcBaseHMC.seed
[ OK ] McmcBaseHMC.seed (0 ms)
[ RUN ] McmcBaseHMC.set_nominal_stepsize
[ OK ] McmcBaseHMC.set_nominal_stepsize (0 ms)
[ RUN ] McmcBaseHMC.set_stepsize_jitter
[ OK ] McmcBaseHMC.set_stepsize_jitter (0 ms)
[----------] 4 tests from McmcBaseHMC (0 ms total)

[----------] Global test environment tear-down
[==========] 4 tests from 1 test case ran. (0 ms total)
[ PASSED ] 4 tests.
------------------------------------------------------------
test/gm/arguments/argument_configuration.exe --gtest_output="xml:test/gm/arguments/argument_configuration.xml";
Running main() from gtest_main.cc
[==========] Running 11 tests from 1 test case.
[----------] Global test environment set-up.
[----------] 11 tests from StanGmArgumentsConfiguration
uname: not found
uname: not found
g++ -I src -isystem lib/eigen_3.2.0 -isystem lib/boost_1.54.0 -Wall -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -m64 -Wno-unused-function -Wno-uninitialized -O3 lib/gtest_1.7.0/src/gtest_main.cc test/gm/compile_models.o -DGTEST_USE_OWN_TR1_TUPLE -DGTEST_HAS_PTHREAD=0 -I lib/gtest_1.7.0/include -I lib/gtest_1.7.0 -o test/gm/compile_models.exe test/libgtest.a -Lbin -lstan -static-libgcc -static-libstdc++ -Lbin -lstanc
INFO: Could not find files for the given pattern(s).
INFO: Could not find files for the given pattern(s).
------------------------------------------------------------
test/gm/compile_models.exe --gtest_output="xml:test/gm/compile_models.xml";
Running main() from gtest_main.cc
[==========] Running 3 tests from 1 test case.
[----------] Global test environment set-up.
[----------] 3 tests from gm
[ RUN ] gm.compile_models
[ OK ] gm.compile_models (0 ms)
[ RUN ] gm.issue91_segfault_printing_uninitialized
uname: not found
uname: not found
INFO: Could not find files for the given pattern(s).
make[1]: warning: jobserver unavailable: using -j1. Add `+' to parent make rule.
make[1]: warning: jobserver unavailable: using -j1. Add `+' to parent make rule.
make[1]: warning: jobserver unavailable: using -j1. Add `+' to parent make rule.
[ RUN ] StanGmArgumentsConfiguration.TestMethod
[ OK ] StanGmCommand.zero_init_value_fail (20717 ms)
[ RUN ] StanGmCommand.zero_init_domain_fail
[ OK ] StanGmCommand.zero_init_domain_fail (140 ms)
[ RUN ] StanGmCommand.user_init_value_fail
[ OK ] gm.issue91_segfault_printing_uninitialized (5818 ms)
[ RUN ] gm.issue109_csv_header_consistent_with_samples
[ OK ] StanGmCommand.user_init_value_fail (110 ms)
[ RUN ] StanGmCommand.user_init_domain_fail
[ OK ] StanGmCommand.user_init_domain_fail (78 ms)
[ RUN ] StanGmCommand.CheckCommand_default
[ OK ] gm.issue109_csv_header_consistent_with_samples (110 ms)
[----------] 3 tests from gm (5928 ms total)

[----------] Global test environment tear-down
[==========] 3 tests from 1 test case ran. (5928 ms total)
[ PASSED ] 3 tests.
[ OK ] StanGmCommand.CheckCommand_default (15 ms)
[ RUN ] StanGmCommand.CheckCommand_help
[ OK ] StanGmCommand.CheckCommand_help (16 ms)
[ RUN ] StanGmCommand.CheckCommand_unrecognized_argument
[ OK ] StanGmCommand.CheckCommand_unrecognized_argument (31 ms)
[----------] 7 tests from StanGmCommand (21107 ms total)

[----------] Global test environment tear-down
[==========] 7 tests from 1 test case ran. (21107 ms total)
[ PASSED ] 7 tests.
[ OK ] StanGmArgumentsConfiguration.TestMethod (2871 ms)
[ RUN ] StanGmArgumentsConfiguration.TestIdWithMethod
[ OK ] StanGmArgumentsConfiguration.TestIdWithMethod (62 ms)
[ RUN ] StanGmArgumentsConfiguration.TestIdWithoutMethod
[ OK ] StanGmArgumentsConfiguration.TestIdWithoutMethod (31 ms)
[ RUN ] StanGmArgumentsConfiguration.TestDataWithMethod
[ OK ] StanGmArgumentsConfiguration.TestDataWithMethod (47 ms)
[ RUN ] StanGmArgumentsConfiguration.TestDataWithoutMethod
[ OK ] StanGmArgumentsConfiguration.TestDataWithoutMethod (16 ms)
[ RUN ] StanGmArgumentsConfiguration.TestInitWithMethod
[ OK ] StanGmArgumentsConfiguration.TestInitWithMethod (62 ms)
[ RUN ] StanGmArgumentsConfiguration.TestInitWithoutMethod
[ OK ] StanGmArgumentsConfiguration.TestInitWithoutMethod (16 ms)
[ RUN ] StanGmArgumentsConfiguration.TestRandomWithMethod
[ OK ] StanGmArgumentsConfiguration.TestRandomWithMethod (47 ms)
[ RUN ] StanGmArgumentsConfiguration.TestRandomWithoutMethod
[ OK ] StanGmArgumentsConfiguration.TestRandomWithoutMethod (15 ms)
[ RUN ] StanGmArgumentsConfiguration.TestOutputWithMethod
[ OK ] StanGmArgumentsConfiguration.TestOutputWithMethod (328 ms)
[ RUN ] StanGmArgumentsConfiguration.TestOutputWithoutMethod
[ OK ] StanGmArgumentsConfiguration.TestOutputWithoutMethod (93 ms)
[----------] 11 tests from StanGmArgumentsConfiguration (3588 ms total)

[----------] Global test environment tear-down
[==========] 11 tests from 1 test case ran. (16364 ms total)
[ PASSED ] 11 tests.

<http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/ws/>exit> 0
ERROR: Publisher hudson.plugins.warnings.WarningsPublisher aborted due to exception
java.io.IOException: Error: No warning parsers defined in the job configuration.
at hudson.plugins.warnings.WarningsPublisher.perform(WarningsPublisher.java:316)
at hudson.plugins.analysis.core.HealthAwareRecorder.perform(HealthAwareRecorder.java:333)
at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:20)
at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:781)
at hudson.model.AbstractBuild$AbstractBuildExecution.performAllBuildSteps(AbstractBuild.java:753)
at hudson.model.Build$BuildExecution.post2(Build.java:183)
at hudson.model.AbstractBuild$AbstractBuildExecution.post(AbstractBuild.java:706)
at hudson.model.Run.execute(Run.java:1690)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:46)
at hudson.model.ResourceController.execute(ResourceController.java:88)
at hudson.model.Executor.run(Executor.java:230)
Recording test results

[mc.sta...@gmail.com]

See <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/1105/changes>