Build failed in Jenkins: Stan Unit Tests #1056

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mc.sta...@gmail.com

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Jun 12, 2012, 11:22:17 AM6/12/12
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See <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/1056/>

------------------------------------------
Started by user Daniel Lee
Building in workspace <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/ws/>
Checkout:workspace / <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/ws/> - hudson.remoting.LocalChannel@120a6a2
Using strategy: Default
Last Built Revision: Revision c5b75cea540165d71c9e94c0bfc9c21db1802c19 (origin/mixed_type)
Fetching changes from 1 remote Git repository
Fetching upstream changes from https://code.google.com/p/stan/
ERROR: Couldn't find any revision to build. Verify the repository and branch configuration for this job.
Recording test results

mc.sta...@gmail.com

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Jun 12, 2012, 11:28:56 AM6/12/12
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See <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/1057/>

------------------------------------------
[...truncated 2294 lines...]
[ OK ] io_writer.cov_matrix_unconstrain_exception (0 ms)
[----------] 10 tests from io_writer (1 ms total)

[----------] Global test environment tear-down
[==========] 10 tests from 1 test case ran. (1 ms total)
[ PASSED ] 10 tests.
------------------------------------------------------------
g++ -I src -I lib -O3 -Wall -Wno-unused-function -Wno-uninitialized -static-libgcc -I lib/gtest/include -I lib/gtest -DGTEST_HAS_PTHREAD=0 lib/gtest/src/gtest_main.cc test/libgtest.a -o test/math/matrix_error_handling.exe test/math/matrix_error_handling.o
test/math/constants.exe --gtest_output="xml:test/math/constants.xml"
Running main() from gtest_main.cc
[==========] Running 9 tests from 1 test case.
[----------] Global test environment set-up.
[----------] 9 tests from MathsConstants
[ RUN ] MathsConstants.e
[ OK ] MathsConstants.e (0 ms)
[ RUN ] MathsConstants.sqrt2
[ OK ] MathsConstants.sqrt2 (0 ms)
[ RUN ] MathsConstants.log2
[ OK ] MathsConstants.log2 (0 ms)
[ RUN ] MathsConstants.log10
[ OK ] MathsConstants.log10 (0 ms)
[ RUN ] MathsConstants.infty
[ OK ] MathsConstants.infty (0 ms)
[ RUN ] MathsConstants.neg_infty
[ OK ] MathsConstants.neg_infty (0 ms)
[ RUN ] MathsConstants.nan
[ OK ] MathsConstants.nan (0 ms)
[ RUN ] MathsConstants.epsilon
[ OK ] MathsConstants.epsilon (0 ms)
[ RUN ] MathsConstants.negative_epsilon
[ OK ] MathsConstants.negative_epsilon (0 ms)
[----------] 9 tests from MathsConstants (0 ms total)

[----------] Global test environment tear-down
[==========] 9 tests from 1 test case ran. (0 ms total)
[ PASSED ] 9 tests.
------------------------------------------------------------
g++ -I src -I lib -O3 -Wall -Wno-unused-function -Wno-uninitialized -static-libgcc -I lib/gtest/include -I lib/gtest -DGTEST_HAS_PTHREAD=0 lib/gtest/src/gtest_main.cc test/libgtest.a -o test/math/matrix.exe test/math/matrix.o
test/math/error_handling.exe --gtest_output="xml:test/math/error_handling.xml"
test/math/matrix_error_handling.exe --gtest_output="xml:test/math/matrix_error_handling.xml"
Running main() from gtest_main.cc
[==========] Running 21 tests from 1 test case.
[----------] Global test environment set-up.
[----------] 21 tests from MathErrorHandling
[ RUN ] MathErrorHandling.CheckNotNanDefaultPolicy
[ OK ] MathErrorHandling.CheckNotNanDefaultPolicy (0 ms)
[ RUN ] MathErrorHandling.CheckNotNanErrnoPolicy
[ OK ] MathErrorHandling.CheckNotNanErrnoPolicy (0 ms)
[ RUN ] MathErrorHandling.CheckNotNanDefaultPolicyDefaultResult
[ OK ] MathErrorHandling.CheckNotNanDefaultPolicyDefaultResult (0 ms)
[ RUN ] MathErrorHandling.CheckFiniteDefaultPolicy
[ OK ] MathErrorHandling.CheckFiniteDefaultPolicy (0 ms)
[ RUN ] MathErrorHandling.CheckFiniteErrnoPolicy
[ OK ] MathErrorHandling.CheckFiniteErrnoPolicy (0 ms)
[ RUN ] MathErrorHandling.CheckFiniteVectorDefaultPolicy
[ OK ] MathErrorHandling.CheckFiniteVectorDefaultPolicy (0 ms)
[ RUN ] MathErrorHandling.CheckFiniteVectorErrnoPolicy
[ OK ] MathErrorHandling.CheckFiniteVectorErrnoPolicy (0 ms)
[ RUN ] MathErrorHandling.CheckBoundedDefaultPolicyX
[ OK ] MathErrorHandling.CheckBoundedDefaultPolicyX (0 ms)
[ RUN ] MathErrorHandling.CheckBoundedDefaultPolicyLow
[ OK ] MathErrorHandling.CheckBoundedDefaultPolicyLow (0 ms)
[ RUN ] MathErrorHandling.CheckBoundedDefaultPolicyHigh
[ OK ] MathErrorHandling.CheckBoundedDefaultPolicyHigh (0 ms)
[ RUN ] MathErrorHandling.CheckBoundedErrnoPolicyX
[ OK ] MathErrorHandling.CheckBoundedErrnoPolicyX (0 ms)
[ RUN ] MathErrorHandling.CheckBoundedErrnoPolicyLow
[ OK ] MathErrorHandling.CheckBoundedErrnoPolicyLow (0 ms)
[ RUN ] MathErrorHandling.CheckBoundedErrnoPolicyHigh
[ OK ] MathErrorHandling.CheckBoundedErrnoPolicyHigh (0 ms)
[ RUN ] MathErrorHandling.CheckGreaterDefaultPolicy
[ OK ] MathErrorHandling.CheckGreaterDefaultPolicy (0 ms)
[ RUN ] MathErrorHandling.CheckGreaterErrnoPolicy
[ OK ] MathErrorHandling.CheckGreaterErrnoPolicy (0 ms)
[ RUN ] MathErrorHandling.CheckGreaterOrEqualDefaultPolicy
[ OK ] MathErrorHandling.CheckGreaterOrEqualDefaultPolicy (0 ms)
[ RUN ] MathErrorHandling.CheckGreaterOrEqualErrnoPolicy
[ OK ] MathErrorHandling.CheckGreaterOrEqualErrnoPolicy (0 ms)
[ RUN ] MathErrorHandling.CheckLessDefaultPolicy
[ OK ] MathErrorHandling.CheckLessDefaultPolicy (0 ms)
[ RUN ] MathErrorHandling.CheckLessErrnoPolicy
[ OK ] MathErrorHandling.CheckLessErrnoPolicy (0 ms)
[ RUN ] MathErrorHandling.CheckLessOrEqualDefaultPolicy
[ OK ] MathErrorHandling.CheckLessOrEqualDefaultPolicy (0 ms)
[ RUN ] MathErrorHandling.CheckLessOrEqualErrnoPolicy
[ OK ] MathErrorHandling.CheckLessOrEqualErrnoPolicy (0 ms)
[----------] 21 tests from MathErrorHandling (1 ms total)

[----------] Global test environment tear-down
[==========] 21 tests from 1 test case ran. (1 ms total)
[ PASSED ] 21 tests.
------------------------------------------------------------
g++ -I src -I lib -O3 -Wall -Wno-unused-function -Wno-uninitialized -static-libgcc -I lib/gtest/include -I lib/gtest -DGTEST_HAS_PTHREAD=0 lib/gtest/src/gtest_main.cc test/libgtest.a -o test/math/special_functions.exe test/math/special_functions.o
Running main() from gtest_main.cc
[==========] Running 4 tests from 1 test case.
[----------] Global test environment set-up.
[----------] 4 tests from stanMathMatrixErrorHandling
[ RUN ] stanMathMatrixErrorHandling.checkNotNanEigenRow
[ OK ] stanMathMatrixErrorHandling.checkNotNanEigenRow (1 ms)
[ RUN ] stanMathMatrixErrorHandling.checkSimplex
[ OK ] stanMathMatrixErrorHandling.checkSimplex (0 ms)
[ RUN ] stanMathMatrixErrorHandling.checkSymmetric
[ OK ] stanMathMatrixErrorHandling.checkSymmetric (0 ms)
[ RUN ] stanMathMatrixErrorHandling.checkCovMatrix
[ OK ] stanMathMatrixErrorHandling.checkCovMatrix (0 ms)
[----------] 4 tests from stanMathMatrixErrorHandling (1 ms total)

[----------] Global test environment tear-down
[==========] 4 tests from 1 test case ran. (1 ms total)
[ PASSED ] 4 tests.
test/math/matrix.exe --gtest_output="xml:test/math/matrix.xml"
------------------------------------------------------------
g++ -I src -I lib -O3 -Wall -Wno-unused-function -Wno-uninitialized -static-libgcc -I lib/gtest/include -I lib/gtest -DGTEST_HAS_PTHREAD=0 lib/gtest/src/gtest_main.cc test/libgtest.a -o test/mcmc/convergence.exe test/mcmc/convergence.o
Running main() from gtest_main.cc
[==========] Running 57 tests from 3 test cases.
[----------] Global test environment set-up.
[----------] 27 tests from matrixTest
[ RUN ] matrixTest.col
[ OK ] matrixTest.col (0 ms)
[ RUN ] matrixTest.row
[ OK ] matrixTest.row (0 ms)
[ RUN ] matrixTest.subtract_c_m
[ OK ] matrixTest.subtract_c_m (0 ms)
[ RUN ] matrixTest.subtract_c_rv
[ OK ] matrixTest.subtract_c_rv (0 ms)
[ RUN ] matrixTest.subtract_c_v
[ OK ] matrixTest.subtract_c_v (0 ms)
[ RUN ] matrixTest.add_c_m
[ OK ] matrixTest.add_c_m (0 ms)
[ RUN ] matrixTest.add_c_rv
[ OK ] matrixTest.add_c_rv (0 ms)
[ RUN ] matrixTest.add_c_v
[ OK ] matrixTest.add_c_v (0 ms)
[ RUN ] matrixTest.multiply_c_v
[ OK ] matrixTest.multiply_c_v (0 ms)
[ RUN ] matrixTest.multiply_c_rv
[ OK ] matrixTest.multiply_c_rv (0 ms)
[ RUN ] matrixTest.multiply_c_m
[ OK ] matrixTest.multiply_c_m (0 ms)
[ RUN ] matrixTest.eltMultiplyVec
[ OK ] matrixTest.eltMultiplyVec (1 ms)
[ RUN ] matrixTest.eltMultiplyVecException
[ OK ] matrixTest.eltMultiplyVecException (0 ms)
[ RUN ] matrixTest.eltMultiplyRowVec
[ OK ] matrixTest.eltMultiplyRowVec (0 ms)
[ RUN ] matrixTest.eltMultiplyRowVecException
[ OK ] matrixTest.eltMultiplyRowVecException (0 ms)
[ RUN ] matrixTest.eltMultiplyMatrix
[ OK ] matrixTest.eltMultiplyMatrix (0 ms)
[ RUN ] matrixTest.eltMultiplyMatrixException
[ OK ] matrixTest.eltMultiplyMatrixException (0 ms)
[ RUN ] matrixTest.eltDivideVec
[ OK ] matrixTest.eltDivideVec (0 ms)
[ RUN ] matrixTest.eltDivideVecException
[ OK ] matrixTest.eltDivideVecException (0 ms)
[ RUN ] matrixTest.eltDivideRowVec
[ OK ] matrixTest.eltDivideRowVec (0 ms)
[ RUN ] matrixTest.eltDivideRowVecException
[ OK ] matrixTest.eltDivideRowVecException (0 ms)
[ RUN ] matrixTest.eltDivideMatrix
0.1 0.02 0.003
0.0004 5e-005 6e-006
[ OK ] matrixTest.eltDivideMatrix (0 ms)
[ RUN ] matrixTest.eltDivideMatrixException
[ OK ] matrixTest.eltDivideMatrixException (0 ms)
[ RUN ] matrixTest.mdivide_left_val
[ OK ] matrixTest.mdivide_left_val (0 ms)
[ RUN ] matrixTest.mdivide_right_val
[ OK ] matrixTest.mdivide_right_val (0 ms)
[ RUN ] matrixTest.mdivide_left_tri_val
[ OK ] matrixTest.mdivide_left_tri_val (0 ms)
[ RUN ] matrixTest.mdivide_right_tri_val
[ OK ] matrixTest.mdivide_right_tri_val (0 ms)
[----------] 27 tests from matrixTest (1 ms total)

[----------] 24 tests from matrix_test
[ RUN ] matrix_test.resize_double
[ OK ] matrix_test.resize_double (0 ms)
[ RUN ] matrix_test.resize_svec_double
[ OK ] matrix_test.resize_svec_double (0 ms)
[ RUN ] matrix_test.resize_vec_double
[ OK ] matrix_test.resize_vec_double (0 ms)
[ RUN ] matrix_test.resize_rvec_double
[ OK ] matrix_test.resize_rvec_double (0 ms)
[ RUN ] matrix_test.resize_mat_double
[ OK ] matrix_test.resize_mat_double (0 ms)
[ RUN ] matrix_test.resize_svec_svec_double
[ OK ] matrix_test.resize_svec_svec_double (0 ms)
[ RUN ] matrix_test.resize_svec_v_double
[ OK ] matrix_test.resize_svec_v_double (0 ms)
[ RUN ] matrix_test.resize_svec_rv_double
[ OK ] matrix_test.resize_svec_rv_double (0 ms)
[ RUN ] matrix_test.resize_svec_svec_matrix_double
[ OK ] matrix_test.resize_svec_svec_matrix_double (0 ms)
[ RUN ] matrix_test.exp__matrix
[ OK ] matrix_test.exp__matrix (0 ms)
[ RUN ] matrix_test.log__matrix
[ OK ] matrix_test.log__matrix (0 ms)
[ RUN ] matrix_test.add_v_exception
[ OK ] matrix_test.add_v_exception (0 ms)
[ RUN ] matrix_test.add_rv_exception
[ OK ] matrix_test.add_rv_exception (0 ms)
[ RUN ] matrix_test.add_m_exception
[ OK ] matrix_test.add_m_exception (0 ms)
[ RUN ] matrix_test.subtract_v_exception
[ OK ] matrix_test.subtract_v_exception (0 ms)
[ RUN ] matrix_test.subtract_rv_exception
[ OK ] matrix_test.subtract_rv_exception (0 ms)
[ RUN ] matrix_test.subtract_m_exception
[ OK ] matrix_test.subtract_m_exception (0 ms)
[ RUN ] matrix_test.multiply_rv_v_exception
[ OK ] matrix_test.multiply_rv_v_exception (0 ms)
[ RUN ] matrix_test.multiply_m_v_exception
[ OK ] matrix_test.multiply_m_v_exception (0 ms)
[ RUN ] matrix_test.multiply_rv_m_exception
[ OK ] matrix_test.multiply_rv_m_exception (0 ms)
[ RUN ] matrix_test.multiply_m_m_exception
[ OK ] matrix_test.multiply_m_m_exception (0 ms)
[ RUN ] matrix_test.cholesky_decompose_exception
[ OK ] matrix_test.cholesky_decompose_exception (0 ms)
[ RUN ] matrix_test.std_vector_sum_double
[ OK ] matrix_test.std_vector_sum_double (0 ms)
[ RUN ] matrix_test.std_vector_sum_int
[ OK ] matrix_test.std_vector_sum_int (0 ms)
[----------] 24 tests from matrix_test (1 ms total)

[----------] 6 tests from matrix
[ RUN ] matrix.get_base1_vec1
[ OK ] matrix.get_base1_vec1 (0 ms)
[ RUN ] matrix.get_base1_vec2
[ OK ] matrix.get_base1_vec2 (0 ms)
[ RUN ] matrix.get_base1_matrix
[ OK ] matrix.get_base1_matrix (1 ms)
[ RUN ] matrix.get_base1_vector
[ OK ] matrix.get_base1_vector (0 ms)
[ RUN ] matrix.get_base1_row_vector
[ OK ] matrix.get_base1_row_vector (0 ms)
[ RUN ] matrix.get_base1_8
Build timed out (after 3 minutes). Marking the build as failed.
make: *** [test/prob/transform.o] Error 127
make: *** Waiting for unfinished jobs....
make: *** [test/math/special_functions.exe] Error 127
Recording test results
[ OK ] matrix.get_base1_8 (211 ms)
[----------] 6 tests from matrix (212 ms total)

[----------] Global test environment tear-down
[==========] 57 tests from 3 test cases ran. (214 ms total)
[ PASSED ] 57 tests.

mc.sta...@gmail.com

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Jun 12, 2012, 11:40:03 AM6/12/12
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See <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/1058/>

------------------------------------------
Started by user Daniel Lee
Building in workspace <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/ws/>
java.io.IOException: Failed to mkdirs: <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/ws/>
at hudson.FilePath.mkdirs(FilePath.java:901)
at hudson.model.AbstractProject.checkout(AbstractProject.java:1246)
at hudson.model.AbstractBuild$AbstractBuildExecution.defaultCheckout(AbstractBuild.java:589)
at jenkins.scm.SCMCheckoutStrategy.checkout(SCMCheckoutStrategy.java:88)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:494)
at hudson.model.Run.execute(Run.java:1484)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:46)
at hudson.model.ResourceController.execute(ResourceController.java:88)
at hudson.model.Executor.run(Executor.java:236)
Recording test results
ERROR: Publisher hudson.tasks.junit.JUnitResultArchiver aborted due to exception
<http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/ws/> does not exist.
at org.apache.tools.ant.types.AbstractFileSet.getDirectoryScanner(AbstractFileSet.java:483)
at org.apache.tools.ant.types.AbstractFileSet.getDirectoryScanner(AbstractFileSet.java:460)
at hudson.tasks.junit.JUnitParser$ParseResultCallable.invoke(JUnitParser.java:105)
at hudson.tasks.junit.JUnitParser$ParseResultCallable.invoke(JUnitParser.java:87)
at hudson.FilePath.act(FilePath.java:842)
at hudson.FilePath.act(FilePath.java:824)
at hudson.tasks.junit.JUnitParser.parse(JUnitParser.java:83)
at hudson.tasks.junit.JUnitResultArchiver.parse(JUnitResultArchiver.java:122)
at hudson.tasks.junit.JUnitResultArchiver.perform(JUnitResultArchiver.java:134)
at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:19)
at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:717)
at hudson.model.AbstractBuild$AbstractBuildExecution.performAllBuildSteps(AbstractBuild.java:692)
at hudson.model.Build$BuildExecution.post2(Build.java:183)
at hudson.model.AbstractBuild$AbstractBuildExecution.post(AbstractBuild.java:639)
at hudson.model.Run.execute(Run.java:1509)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:46)
at hudson.model.ResourceController.execute(ResourceController.java:88)
at hudson.model.Executor.run(Executor.java:236)

mc.sta...@gmail.com

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Jun 12, 2012, 11:52:04 AM6/12/12
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See <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/1059/>

------------------------------------------
Started by user Daniel Lee
Building in workspace <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/ws/>
Checkout:workspace / <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/ws/> - hudson.remoting.LocalChannel@4233fd
Using strategy: Default
Last Built Revision: Revision c5b75cea540165d71c9e94c0bfc9c21db1802c19 (origin/mixed_type)
Cloning the remote Git repository
Cloning repository origin
Fetching upstream changes from https://code.google.com/p/stan/
ERROR: Problem fetching from origin / origin - could be unavailable. Continuing anyway.
hudson.plugins.git.GitException: Error performing command: git.exe fetch -t https://code.google.com/p/stan/ +refs/heads/*:refs/remotes/origin/*
at hudson.plugins.git.GitAPI.launchCommandIn(GitAPI.java:793)
at hudson.plugins.git.GitAPI.launchCommand(GitAPI.java:748)
at hudson.plugins.git.GitAPI.fetch(GitAPI.java:196)
at hudson.plugins.git.GitAPI.fetch(GitAPI.java:994)
at hudson.plugins.git.GitSCM$2.invoke(GitSCM.java:1141)
at hudson.plugins.git.GitSCM$2.invoke(GitSCM.java:1063)
at hudson.FilePath.act(FilePath.java:842)
at hudson.FilePath.act(FilePath.java:824)
at hudson.plugins.git.GitSCM.checkout(GitSCM.java:1063)
at hudson.model.AbstractProject.checkout(AbstractProject.java:1248)
at hudson.model.AbstractBuild$AbstractBuildExecution.defaultCheckout(AbstractBuild.java:589)
at jenkins.scm.SCMCheckoutStrategy.checkout(SCMCheckoutStrategy.java:88)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:494)
at hudson.model.Run.execute(Run.java:1484)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:46)
at hudson.model.ResourceController.execute(ResourceController.java:88)
at hudson.model.Executor.run(Executor.java:236)
Caused by: java.lang.InterruptedException
at java.lang.ProcessImpl.waitFor(Native Method)
at hudson.Proc$LocalProc.join(Proc.java:319)
at hudson.Launcher$ProcStarter.join(Launcher.java:345)
at hudson.plugins.git.GitAPI.launchCommandIn(GitAPI.java:774)
... 16 more
ERROR: Could not fetch from any repository
FATAL: Could not fetch from any repository
hudson.plugins.git.GitException: Could not fetch from any repository
at hudson.plugins.git.GitSCM$2.invoke(GitSCM.java:1153)
at hudson.plugins.git.GitSCM$2.invoke(GitSCM.java:1063)
at hudson.FilePath.act(FilePath.java:842)
at hudson.FilePath.act(FilePath.java:824)
at hudson.plugins.git.GitSCM.checkout(GitSCM.java:1063)
at hudson.model.AbstractProject.checkout(AbstractProject.java:1248)

mc.sta...@gmail.com

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Jun 12, 2012, 11:52:16 AM6/12/12
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See <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/1060/>

------------------------------------------
Started by user Daniel Lee
Building in workspace <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/ws/>
Checkout:workspace / <http://d1m1s1b1.stat.columbia.edu:8080/job/Stan%20Unit%20Tests/ws/> - hudson.remoting.LocalChannel@4233fd
Using strategy: Default
Last Built Revision: Revision c5b75cea540165d71c9e94c0bfc9c21db1802c19 (origin/mixed_type)
Fetching changes from 1 remote Git repository
Fetching upstream changes from https://code.google.com/p/stan/
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