Problem loading swig generated modules in spyder but not in command line ipython

[Soren Christensen]

Hi, 

 I am using spyder 3.2.5 in a fully updated anconda2  environment on Ubuntu 16.04.

I install the itk package:

conda install --channel https://conda.anaconda.org/conda-forge itk

When using this from spyders ipython console I get the error at the end of this message.

If I issue the same two commands in ipython from the command line (but also part of the anaconda 2 install), then I don't get the error.

Any ideas what is going wrong and why appreciated!

Thanks.

Soren

In [1]: import itk

In [2]: itk.Image

Traceback (most recent call last):

File "<ipython-input-2-72d3246fd559>", line 1, in <module>

itk.Image

File "/home/sorenc/anaconda2/lib/python2.7/site-packages/itkLazy.py", line 44, in __getattribute__

itkBase.LoadModule(module, namespace)

File "/home/sorenc/anaconda2/lib/python2.7/site-packages/itkBase.py", line 118, in LoadModule

LoadModule(dep, namespace)

File "/home/sorenc/anaconda2/lib/python2.7/site-packages/itkBase.py", line 128, in LoadModule

module = loader.load(swigModuleName)

File "/home/sorenc/anaconda2/lib/python2.7/site-packages/itkBase.py", line 250, in load

return imp.load_module(name, fp, pathname, description)

File "/home/sorenc/anaconda2/lib/python2.7/site-packages/itk/Configuration/../ITKPyBasePython.py", line 21, in <module>

_ITKPyBasePython = swig_import_helper()

File "/home/sorenc/anaconda2/lib/python2.7/site-packages/itk/Configuration/../ITKPyBasePython.py", line 18, in swig_import_helper

return importlib.import_module(mname)

File "/home/sorenc/anaconda2/lib/python2.7/importlib/__init__.py", line 37, in import_module

__import__(name)

File "/home/sorenc/anaconda2/lib/python2.7/site-packages/pyximport/pyximport.py", line 302, in find_module

elif os.path.isfile(path):

File "/home/sorenc/anaconda2/lib/python2.7/genericpath.py", line 37, in isfile

st = os.stat(path)

TypeError: coercing to Unicode: need string or buffer, list found

In [3]:

In [3]:

[Carlos Córdoba]

Please see

https://github.com/spyder-ide/spyder/issues/5299

for a temporal solution.


Cheers,
Carlos

El 09/01/18 a las 01:07, Soren Christensen escribió:

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[Soren Christensen]

Thank you!

That solved it.

Thanks for your great work!

Soren