SLiMPred in SLiMSuite software package

[rim.z...@phystech.edu]

Good day, colleagues!

I tryed to download SLiMSuite software package from http://www.southampton.ac.uk/~re1u06/software/packages/slimsuite/ in order to get standalone SLiMPred to discover motifs in about 10000 proteins. But in spite of "The Main SLiMSuite programs/modules in SLiMSuite are: CompariMotif, QSLiMFinder, SLiMBench, SLiMFarmer, SLiMFinder, SLiMMaker, SLiMPred, SLiMPrints, SLiMProb, SLiMSuite."(c) there are no SLiMPred in the last release of the package :) 

I wonder how can get it, if I can? Or maybe you could advise me another way to investigate motifs in my set using algorithms with training on Short Linear Motif containing proteins. 

Thank you in advance!

Best regards,

Rim Zaripov

[Richard Edwards]

Dear Rim,

SLiMPred is not actually part of SLiMSuite and is not available for standalone running as part of that package. As far as I know it is only available through the server. If you email Denis Shields (denis....@ucd.ie), he should be able to advise you further.

Best wishes,

Rich

PS. The new home of slimsuite is http://slimsuite.unsw.edu.au if any of the other tools are of interest.

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[rim.z...@phystech.edu]

Dear Rich,

thanks a lot for your reply! I'll have a try.

Best regards,

Rim Zaripov

четверг, 28 апреля 2016 г., 1:53:23 UTC+3 пользователь Richard Edwards написал:

Dear Rim,

SLiMPred is not actually part of SLiMSuite and is not available for standalone running as part of that package. As far as I know it is only available through the server. If you email Denis Shields (denis....@ucd.ie), he should be able to advise you further.

Best wishes,

Rich

PS. The new home of slimsuite is http://slimsuite.unsw.edu.au if any of the other tools are of interest.

On 27 April 2016 at 02:12, <rim.z...@phystech.edu> wrote:

Good day, colleagues!

I tryed to download SLiMSuite software package from http://www.southampton.ac.uk/~re1u06/software/packages/slimsuite/ in order to get standalone SLiMPred to discover motifs in about 10000 proteins. But in spite of "The Main SLiMSuite programs/modules in SLiMSuite are: CompariMotif, QSLiMFinder, SLiMBench, SLiMFarmer, SLiMFinder, SLiMMaker, SLiMPred, SLiMPrints, SLiMProb, SLiMSuite."(c) there are no SLiMPred in the last release of the package :) 

I wonder how can get it, if I can? Or maybe you could advise me another way to investigate motifs in my set using algorithms with training on Short Linear Motif containing proteins. 

Thank you in advance!

Best regards,

Rim Zaripov

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