server.R
shinyServer(function(input, output,session) {
library(cgdsr)
cgds<-CGDS("
http://www.cbioportal.org/public-portal/")
Studies <- getCancerStudies(cgds)
updateSelectizeInput(session, 'StudyID2', choices = Studies[,1])
Cases<- getCaseLists(input$StudyID2)
updateSelectizeInput(session, 'CaseID', choices = Cases[,1])
output$ProfData <- renderDataTable({
getProfileData(cgds, c("HBXIP" ,"C16orf5" ,"SELS" , "MAGI2-IT1"),input$CaseID, "brca_tcga_rna_seq_v2_mrna")
})
})