problems with the sailfish quant command

[赵路]

I tried to use the sailfish quant command.  I got the following error. It seems that it aborted from an assert statement.



Version Info: This is the most recent version

Library format { type:single end, relative orientation:none, strandedness:sense }
reading index . . . done
index contained 11855 kmers
file /home/***/simulation/simulate_data/simulated.fq:

 0.013646s wall, 0.010000s user + 0.000000s system = 0.010000s CPU (73.3%)


Overall rate: 0 reads / s


 0.015513s wall, 0.010000s user + 0.000000s system = 0.010000s CPU (64.5%)
ERROR: sailfish count (subordinate command) invoked improperly.
Sailfish terminated with return code 256
sailfish: /home/robp/Sailfish-0.6.3-Source/src/QuantificationDriver.cpp:152: int runKmerCounter(const string&, uint32_t, const string&, const std::vector<ReadLibrary>&, const string&, bool): Assertion `status == 0' failed.
./drive.sh: line 22:  6079 Aborted                 (core dumped) sailfish quant -i $indexdir -l "T=SE:S=S" -r $rdfile -f -o $quantdir
End