Error rebuilding Sage (ncurses)

[jhonrubia6]

Hi,

after a git merge develop (SAGE_VERSION=8.0.beta4), I tried to rebuild with make and I get the following error

sage-logger -p 'sage-spkg ncurses-6.0' '/Users/t143730/sage/logs/pkgs/ncurses-6.0.log'

[ncurses-6.0] mkdir: /Users/J_Honrubia/Sage/sage/local/var/lib/sage/installed: Permission denied

[ncurses-6.0] ************************************************************************

[ncurses-6.0] Error creating directory /Users/J_Honrubia/Sage/sage/local/var/lib/sage/installed

[ncurses-6.0] ************************************************************************

[ncurses-6.0] Please email sage-devel (http://groups.google.com/group/sage-devel)

[ncurses-6.0] explaining the problem and including the log file

[ncurses-6.0]   /Users/t143730/sage/logs/pkgs/.log

[ncurses-6.0] Describe your computer, operating system, etc.

[ncurses-6.0] ************************************************************************

make[2]: *** [/Users/t143730/sage/local/var/lib/sage/installed/ncurses-6.0] Error 1

make[1]: *** [all] Error 2

real 0m1.036s

user 0m0.252s

sys 0m0.129s

***************************************************************

Error building Sage.

The following package(s) may have failed to build (not necessarily 

during this run of 'make all'):

* package: ncurses-6.0

  log file: /Users/t143730/sage/logs/pkgs/ncurses-6.0.log

  build directory: /Users/t143730/sage/local/var/tmp/sage/build/ncurses-6.0

OS X version 10.11.6

Imac (IntelCore2Duo)

Any ideas?

regards

[jhonrubia6]

this is the complete log, somehow it is trying to create a S

/Library/Developer/CommandLineTools/usr/bin/make build/make/Makefile

make[1]: `build/make/Makefile' is up to date.

build/bin/sage-logger \

"cd build/make && ./install 'all'" logs/install.log

*** ALL ENVIRONMENT VARIABLES BEFORE BUILD: ***

Apple_PubSub_Socket_Render=/private/tmp/com.apple.launchd.wvo7zYEsAE/Render

HOME=/Users/t143730

LANG=es_ES.UTF-8

LOGNAME=t143730

MAKE=make

MAKEFLAGS= V=1

MAKELEVEL=1

MFLAGS=

PATH=/Users/t143730/sage/build/bin:/Users/t143730/sage/src/bin:/Users/t143730/sage/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/Library/TeX/texbin

PWD=/Users/t143730/sage/build/make

PYTHONPATH=/Users/t143730/sage/local

SAGE_EXTCODE=/Users/t143730/sage/local/share/sage/ext

SAGE_LOCAL=/Users/t143730/sage/local

SAGE_LOGS=/Users/t143730/sage/logs/pkgs

SAGE_ORIG_PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/Library/TeX/texbin

SAGE_ORIG_PATH_SET=True

SAGE_ROOT=/Users/t143730/sage

SAGE_SHARE=/Users/t143730/sage/local/share

SAGE_SPKG_INST=/Users/t143730/sage/local/var/lib/sage/installed

SAGE_SRC=/Users/t143730/sage/src

SAGE_VERSION=8.0.beta4

SECURITYSESSIONID=186a7

SHELL=/bin/bash

SHLVL=4

SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.aggQsC0Rbq/Listeners

TERM=xterm-256color

TERM_PROGRAM=Apple_Terminal

TERM_PROGRAM_VERSION=361.1

TERM_SESSION_ID=BA2F8976-A25B-4038-8F51-F0CCF658AD18

TMPDIR=/var/folders/jz/2g9tqjks4yz7b24v_z7qnjsc0000gn/T/

USER=t143730

XPC_FLAGS=0x0

XPC_SERVICE_NAME=0

_=/usr/bin/env

__CF_USER_TEXT_ENCODING=0x1F5:0x0:0x8

***********************************************

make base

make[2]: Nothing to be done for `base'.

env SAGE_BUILD_TOOLCHAIN=yes make toolchain

make[2]: Nothing to be done for `toolchain'.

make toolchain-deps

make /Users/t143730/sage/local/var/lib/sage/installed/zlib-1.2.8.p0

make[3]: `/Users/t143730/sage/local/var/lib/sage/installed/zlib-1.2.8.p0' is up to date.

make /Users/t143730/sage/local/var/lib/sage/installed/mpir-2.7.2.p0

make[3]: `/Users/t143730/sage/local/var/lib/sage/installed/mpir-2.7.2.p0' is up to date.

make /Users/t143730/sage/local/var/lib/sage/installed/mpfr-3.1.5

make[3]: `/Users/t143730/sage/local/var/lib/sage/installed/mpfr-3.1.5' is up to date.

make /Users/t143730/sage/local/var/lib/sage/installed/mpc-1.0.3.p0

make[3]: `/Users/t143730/sage/local/var/lib/sage/installed/mpc-1.0.3.p0' is up to date.

make doc all-sage

sage-logger -p 'sage-spkg ncurses-6.0' '/Users/t143730/sage/logs/pkgs/ncurses-6.0.log'

[ncurses-6.0] mkdir: /Users/J_Honrubia/Sage/sage/local/var/lib/sage/installed: Permission denied

[ncurses-6.0] ************************************************************************

[ncurses-6.0] Error creating directory /Users/J_Honrubia/Sage/sage/local/var/lib/sage/installed

[ncurses-6.0] ************************************************************************

[ncurses-6.0] Please email sage-devel (http://groups.google.com/group/sage-devel)

[ncurses-6.0] explaining the problem and including the log file

[ncurses-6.0]   /Users/t143730/sage/logs/pkgs/.log

[ncurses-6.0] Describe your computer, operating system, etc.

[ncurses-6.0] ************************************************************************

make[2]: *** [/Users/t143730/sage/local/var/lib/sage/installed/ncurses-6.0] Error 1

make[1]: *** [all] Error 2

real 0m0.376s

user 0m0.234s

sys 0m0.113s

***************************************************************

Error building Sage.

The following package(s) may have failed to build (not necessarily

during this run of 'make all'):

* package: ncurses-6.0

  log file: /Users/t143730/sage/logs/pkgs/ncurses-6.0.log

  build directory: /Users/t143730/sage/local/var/tmp/sage/build/ncurses-6.0

The build directory may contain configuration files and other potentially

helpful information. WARNING: if you now run 'make' again, the build

directory will, by default, be deleted. Set the environment variable

SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this.

make: *** [all] Error 1

And under /Users/t143730 there is no subdirectory named sage

iMac-de-Javier:Sage t143730$ pwd

/Users/t143730/Sage

iMac-de-Javier:Sage t143730$ ls -l

total 888

-rw-r--r--    1 t143730  staff   70187  9 ene 15:36 COPYING.txt

-rw-r--r--    1 t143730  staff    4593  4 jul 21:31 Makefile

-rw-r--r--    1 t143730  staff   15204  4 jul 21:31 README.md

-rw-r--r--    1 t143730  staff      53  4 jul 21:31 VERSION.txt

-rwxr-xr-x    1 t143730  staff    4022  4 jul 21:31 bootstrap

drwxr-xr-x   11 t143730  staff     374  9 ene 15:36 build

drwxr-xr-x    7 t143730  staff     238  4 jul 21:52 config

lrwxr-xr-x    1 t143730  staff      20  6 jul 19:31 config.log -> logs/pkgs/config.log

-rwxr-xr-x    1 t143730  staff   31562  6 jul 19:31 config.status

-rwxr-xr-x    1 t143730  staff  263914  4 jul 21:52 configure

-rw-r--r--    1 t143730  staff   36049  4 jul 21:31 configure.ac

drwxr-xr-x   16 t143730  staff     544 18 abr  2016 git-trac-command

drwxr-xr-x   13 t143730  staff     442 30 abr 12:03 local

drwxr-xr-x    4 t143730  staff     136  6 jul 19:31 logs

drwxr-xr-x   10 t143730  staff     340  9 mar  2016 m4

-rwxr-xr-x    1 t143730  staff    4756  4 jul 21:31 sage

drwxr-xr-x   19 t143730  staff     646  6 jul 19:31 src

drwxr-xr-x  295 t143730  staff   10030  9 may 19:18 upstream

[François Bissey]

The OS X file system only fake case sensitivity, so “Sage” and “sage”
are actually the same folder.

Now it is very suspicious. It fails because permission is denied on
> /Users/J_Honrubia/Sage/sage/local/var/lib/sage/installed
Yet you are t143730 and you are building from /Users/t143730/sage/
so do you have symlinks to another user account for which you
don’t have permission with this user?
the symlink could be
local
local/var
local/var/lib
local/var/lib/sage
local/var/lib/sage/installed

François

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[jhonrubia6]

El jueves, 6 de julio de 2017, 20:52:02 (UTC+2), François Bissey escribió:

The OS X file system only fake case sensitivity, so “Sage” and “sage”
are actually the same folder.

Now it is very suspicious. It fails because permission is denied on
> /Users/J_Honrubia/Sage/sage/local/var/lib/sage/installed
Yet you are t143730 and you are building from /Users/t143730/sage/
so do you have symlinks to another user account for which you
don’t have permission with this user?
the symlink could be
local
local/var
local/var/lib
local/var/lib/sage
local/var/lib/sage/installed

No François, there is no J_Honrubia user on this machine and neither is a symlink on this subdirectories you suggested. Is there a target in the makefile to clean this mess :-)

[jhonrubia6]

Finally I've found the error but I do not know how to unravel it so any help will be welcome

I am working on ticket #22081, and in some commit (ea92d27) I made the error of adding src/bin/sage-env-config file to the commit pushed. After that I did some corrections on code (4851eed->bc476cd->9d94d5c) then I got an error on trac as it was unable to merge (I didn't know yet my error on the previous commit) so I did some merge commits (aee6930->7199b81->787cf58).

Now what I would like to do is apply bc476cd and then 9d94d5c to the head and nothing more, discarding the other commits. I do not know if it is even possible. If not, how do I discard the src/bin/sage-env-config file (which my settings) that is probably stopping trac to merge?

thanks in advance

[Dima Pasechnik]

you can merge individual commits into a branch by doing `git cherry-pick <commit>`.

This should suffice for you to create a branch you like (but do read more docs on git...)