bash-4.1$ ls -ls
total 6384560
3 drwxr-sr-x 3 ae112 ae112 138 Oct 2 18:30 fasta
34 -rw-rw-r-- 1 ae112 ae112 539 Oct 2 22:07 genomeParameters.txt
3 drwxr-sr-x 2 ae112 ae112 44 Oct 2 17:50 gtf
1971746 -rw-r--r-- 1 ae112 ae112 1408386097 Oct 2 18:08 Homo_sapiens.GRCh38.85.gtf
4412706 -rwxrwxrwx 1 ae112 ae112 3151425857 Oct 2 19:13 Homo_sapiens.GRCh38.dna.primary_assembly.fa
66 -rw-rw-r-- 1 ae112 ae112 13380 Oct 2 22:07 Log.out
3 drwx--S--- 2 ae112 ae112 0 Oct 2 22:07 _STARtmp
This is the command:
bash-4.1$ STAR --runThreadN 8 --runMode genomeGenerate --genomeDir ./ --genomeFastaFiles Homo_sapiens.GRCh38.dna.all.fa --sjdbGTFfile Homo_sapiens.GRCh38.85.gtf --sjdbOverhang 74
Oct 02 22:13:20 ..... started STAR run
Oct 02 22:13:21 ... starting to generate Genome files
EXITING because of INPUT ERROR: could not open genomeFastaFile: Homo_sapiens.GRCh38.dna.all.fa
Oct 02 22:13:21 ...... FATAL ERROR, exiting
bash-4.1$
Could you help me undrerstand what's going on? I am running an interactive session on the cluster STAR is loaded, I have 8 cores and ~40GB of memory reserved.