AS and soft clipping

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Oct 19, 2016, 11:09:35 AM10/19/16

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Hi Alex,

How is soft clipping handled in alignment score calculation?

Best
Swati

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Oct 19, 2016, 4:17:47 PM10/19/16

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Hi Swati,

soft-clipped bases do not contribute to the Alignment Score in any way.

Cheers

Alex

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