Best Input for multiline files

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Mikhail Olferiev

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Oct 7, 2016, 11:49:30 AM10/7/16
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Dear All,

I got fastq.qz files for each sample in a multi-line format as shown below.
What would be the bestt way to joint and fix (if necessary) those files.

IF_0015_S23_L001_R1_001.fastq.gz
IF_0015_S23_L001_R2_001.fastq.gz
IF_0015_S23_L002_R1_001.fastq.gz
IF_0015_S23_L002_R2_001.fastq.gz
IF_0015_S23_L003_R1_001.fastq.gz
IF_0015_S23_L003_R2_001.fastq.gz
IF_0015_S23_L004_R1_001.fastq.gz
IF_0015_S23_L004_R2_001.fastq.gz
IF_0015_S23_L005_R1_001.fastq.gz
IF_0015_S23_L005_R2_001.fastq.gz
IF_0015_S23_L006_R1_001.fastq.gz
IF_0015_S23_L006_R2_001.fastq.gz
IF_0015_S23_L007_R1_001.fastq.gz
IF_0015_S23_L007_R2_001.fastq.gz
IF_0015_S23_L008_R1_001.fastq.gz
IF_0015_S23_L008_R2_001.fastq.gz

Mikhail.

Mikhail Olferiev

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Oct 7, 2016, 2:10:50 PM10/7/16
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It is came out that I can combine files using a simple cat command without extracting from archive.
No other fixes and works well so far.

Mikhail.
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