Unaligned BAM as input?

39 views

Skip to first unread message

unread,

Sep 1, 2016, 8:29:53 AM9/1/16

to rna-star

Hi,

is there a new version of STAR where it is possible to feed STAR with an unaligned BAM file?

Thanks for your help,

Anna

unread,

Sep 1, 2016, 6:21:59 PM9/1/16

to rna-star

Hi Anna,

no, this feature is not implemented yet.

If you do not want to store temporary fastq files, you can do on the fly bam to fastq conversion using fifo files.

Cheers

Alex

unread,

Sep 2, 2016, 11:21:54 AM9/2/16

to rna-star

Hi Alex,

I am a big fan of STAR, it is an awesome mapper. It will be a great if you implement this feature of accepting bam file as an input.

Thanks

Swati

unread,

Sep 7, 2016, 12:35:16 PM9/7/16

to rna-star

Hi Swati,

this option is high on my TODO list, will try ti get it out in a month.

Cheers

Alex

unread,

Nov 25, 2016, 2:36:09 AM11/25/16

to rna-star

That's awesome! Looking forward to it!

Anna

Reply all

Reply to author

Forward

0 new messages