Hi there,
This is not an ORM related problem, it's just about schema migration in general.
There are lots of wonderful schema migration tools out there, both commercial and open source.
Personally I like to do this stuff manually but a friend of mine uses
https://www.red-gate.com/ for example.
You could also build a little migration tool using RedBeanPHP fluid mode if you like.
In the past RedBeanPHP offered schema migration helpers but I removed those because, like I said there are
tools that specialize in this kind of work and it seems beyond the scope of an ORM lib.
cheers
gabor