When looking into the RaxML_info.result, the log messages are like below.
Overall Time for 102 Rapid Bootstraps 345.735704 seconds
Average Time per Rapid Bootstrap 3.389566 seconds
Starting ML Search ...
Fast ML optimization finished
Fast ML search on Process 0: Time 416.030319 seconds
Fast ML search on Process 3: Time 501.814788 seconds
Fast ML search on Process 1: Time 503.374405 seconds
Fast ML search on Process 2: Time 518.009467 seconds
Fast ML search on Process 5: Time 559.679391 seconds
It seems very weird because usually when fast ML search ends, it directly get into next step, which is Slow ML search.
The task terminates there without any message.
And of course, bipartition.result file is missing in outputs.
Is it because of the data size?
I re-run the analysis with same parameter, same version of RaxML, but smaller amount of data(Sequence length, No. of taxa) and it just went well.
Please let me know why this happens and how I can fix it.
Thank you all in advance.