connection request on unknown interface when running raxmlHPC-MPI

[zanyv...@gmail.com]

Any ideas on why job fails with

[[17150,1],0] CONNECTION REQUEST ON UNKNOWN INTERFACE [FQDNofserver:97969] [[17150,1],0] CONNECTION REQUEST ON UNKNOWN INTERFACE

root@server: Issue_17334]# more raxml.pbs
#!/bin/bash
#PBS -N raxml_17334
#PBS -l nodes=2:ppn=2,walltime=700:00:00
#PBS -m abe
#PBS -M run...@mail.mil

module load raxml
cd $TMPDIR
cp /media/VD_Research/Analysis/ProjectBased_Analysis/kathy/raxml_runs/Issue_17334/B_yamagata_QC_2933.phy B_yamagata_QC_2933.phy
raxmlHPC-MPI -f a -x 12345 -m GTRGAMMAI -n raxml_17334 -s B_yamagata_QC_2933.phy -# 500 -p 12345
cp -R ./ $PBS_O_WORKDIR

[Alexandros Stamatakis]

this must be a problem with your cluster or job submission script,
better talk to your local sys-admins,

Alexis

On 04.12.2017 14:26, zanyv...@gmail.com wrote:
> Any ideas on why job fails with
>
> [[17150,1],0] CONNECTION REQUEST ON UNKNOWN INTERFACE
> [FQDNofserver:97969] [[17150,1],0] CONNECTION REQUEST ON UNKNOWN INTERFACE
>
>

> root@server <mailto:root@server>: Issue_17334]# more raxml.pbs

> #!/bin/bash
> #PBS -N raxml_17334
> #PBS -l nodes=2:ppn=2,walltime=700:00:00
> #PBS -m abe

> #PBS -M run...@mail.mil <mailto:run...@mail.mil>

>
> module load raxml
> cd $TMPDIR
> cp
> /media/VD_Research/Analysis/ProjectBased_Analysis/kathy/raxml_runs/Issue_17334/B_yamagata_QC_2933.phy
> B_yamagata_QC_2933.phy
> raxmlHPC-MPI -f a -x 12345 -m GTRGAMMAI -n raxml_17334 -s
> B_yamagata_QC_2933.phy -# 500 -p 12345
> cp -R ./ $PBS_O_WORKDIR
>

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--
Alexandros (Alexis) Stamatakis

Research Group Leader, Heidelberg Institute for Theoretical Studies
Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology

www.exelixis-lab.org