Hi,
The RAxML_bestTree.runID is not being written at the end of my run.
I am using this command line:
raxmlHPC-MPI -m GTRGAMMA -p 12345 -d -N 200 -s input.phylip -n runID
The run proceeds with no errors, but at the end I only get the following outputs: RAxML_log.runID.RUN.N, RaxML_randomTree.runID.RUN.N, RAxML_result.runID.RUN.N (with N = 0-200 for the three file types), and RAxML_info.runID.
I have successfully obtained the RAxML_bestTree.runID for several other runs, but it is not working for this particular one (run twice with the same result). In this problematic case, I noticed that the RAxML_info.runID lacks any further information after the 200 inferences (attached).
Any ideas on what the problem is?
Thanks,
Lu