RE: [raxml] Digest for raxml@googlegroups.com - 1 update in 1 topic

[Miller, Mark]

Hi Santiago,

 

For CIPRES, the name of the ascertainment bias file will be set by the interface, and you have no control over it.

In your case, I believe asc~p1.txt  will work.

Check your output, and look for the bias file. It will be named p1.txt or something like that. Make sure your partition file calls for that file name.

 

You can contact me here, or directly if that doesn’t make sense.

 

Mark

 

 

From: ra...@googlegroups.com [mailto:ra...@googlegroups.com]
Sent: Friday, December 29, 2017 4:09 AM
To: Digest recipients <ra...@googlegroups.com>
Subject: [raxml] Digest for ra...@googlegroups.com - 1 update in 1 topic

 

ra...@googlegroups.com

Google Groups

Topic digest
View all topics

·       felsenstein's ascertainment bias correction in CIPRES - 1 Update

felsenstein's ascertainment bias correction in CIPRES

Santiago Ceballos <sgceb...@gmail.com>: Dec 28 01:57PM -0800 Hi,   I'm trying to run the felsenstein's ascertainment bias correction in CIPRES but I get this error:   "custom protein substitution or ascertainment bias file [p0.txt] you want to use does not exist! you need to specify the full path the file name shall not contain blanks!"   Mi corresponding files are:   part.txt: [asc~p0.txt], ASC_DNA, p0=1-8527   p0.txt: 273400   Thanks,   Santiago

Back to top

You received this digest because you're subscribed to updates for this group. You can change your settings on the group membership page. To unsubscribe from this group and stop receiving emails from it send an email to raxml+un...@googlegroups.com.