fast bootstrap run interrupted. go on where stopped?

[Alexander Vowinkel]

Hi,

something weird happened.

I was running a fast bootstrap and accidently moving files

of that run around.

Now I have two RAxML_info files.

The first one (I guess from before moving)

states that the bootstrapping finished:

------------------------------

[...]

Overall Time for 1000 Rapid Bootstraps 71214.883889 seconds

Average Time per Rapid Bootstrap 71.214884 seconds

Starting ML Search ...

------------------------------

The RAxML_bootstrap file there contains 1000 trees.

So this seems to be fine.

The second RAxML_info file lies with a RAxML_bestTree in

a sub-directory.

It basically continues where the first info file ends.

It states that ML search is finished:

------------------------------

Fast ML optimization finished

[...]

ML search took 83540.821969 secs or 23.205784 hours

Combined Bootstrap and ML search took 154755.705982 secs or 42.987696 hours

Drawing Bootstrap Support Values on best-scoring ML tree ...

Found 1 tree in File /path/RAxML_bestTree.foobar

------------------------------

And here occured the error.

So. I have the bootstrap file and the bestTree file.

Can I go on with these files to create the rest of the files?:

bipartitionsBranchLabels and bipartitions

I really would not like to run everything again...

Thanks so much!

[Alexandros Stamatakis]

Hi Alexander,

You can use the -f b option to create the missing files, for details
please have a look at the manual.

Alexis

> --
> You received this message because you are subscribed to the Google
> Groups "raxml" group.
> To unsubscribe from this group and stop receiving emails from it, send
> an email to raxml+un...@googlegroups.com
> <mailto:raxml+un...@googlegroups.com>.
> For more options, visit https://groups.google.com/d/optout.

--
Alexandros (Alexis) Stamatakis

Research Group Leader, Heidelberg Institute for Theoretical Studies
Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology
Adjunct Professor, Dept. of Ecology and Evolutionary Biology, University
of Arizona at Tucson

www.exelixis-lab.org

[Alexander Vowinkel]

Thank you so much!

Worked like a charm.

You saved hours of computing power and the corresponding CO2 ;)

--
You received this message because you are subscribed to a topic in the Google Groups "raxml" group.
To unsubscribe from this topic, visit https://groups.google.com/d/topic/raxml/hNs2r9RKkEw/unsubscribe.
To unsubscribe from this group and all its topics, send an email to raxml+un...@googlegroups.com.

[Alexandros Stamatakis]

:-)

alexis

On 11.09.2015 01:07, Alexander Vowinkel wrote:
> Thank you so much!
> Worked like a charm.
>
> You saved hours of computing power and the corresponding CO2 ;)
>
> 2015-09-07 3:46 GMT-05:00 Alexandros Stamatakis

> <alexandros...@gmail.com <mailto:alexandros...@gmail.com>>:

> <mailto:raxml%2Bunsu...@googlegroups.com>
> <mailto:raxml+un...@googlegroups.com
> <mailto:raxml%2Bunsu...@googlegroups.com>>.

> For more options, visit https://groups.google.com/d/optout.
>
>
> --
> Alexandros (Alexis) Stamatakis
>
> Research Group Leader, Heidelberg Institute for Theoretical Studies
> Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology
> Adjunct Professor, Dept. of Ecology and Evolutionary Biology, University
> of Arizona at Tucson
>

> www.exelixis-lab.org <http://www.exelixis-lab.org>

>
>
> --
> You received this message because you are subscribed to a topic in
> the Google Groups "raxml" group.
> To unsubscribe from this topic, visit
> https://groups.google.com/d/topic/raxml/hNs2r9RKkEw/unsubscribe.
> To unsubscribe from this group and all its topics, send an email to
> raxml+un...@googlegroups.com

> <mailto:raxml%2Bunsu...@googlegroups.com>.