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Hi Paul,
this is somewhat a shot in the dark, but could you try the exact same
run with an additional
--no-bfgs
?
It may very well be related to the invar model or the bug may only occur
for certain bootstrap replicates...
--
Best regards,
Andre
--
Sent with my mu4e
Paul Larson
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Sep 17, 2014, 2:19:06 PM9/17/14
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Thanks for the swift reply
I get the same message with --no-bfgs, and when I exclude Invariant site estimation from the model (with and without --no-bfgs)
-Paul
Andre J. Aberer
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Sep 17, 2014, 2:59:13 PM9/17/14
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ok, then I fear, this is a case for Alexis. It may still take a while
until he gets to this.
Paul Larson
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Sep 17, 2014, 3:03:34 PM9/17/14
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Ok, thanks again!
I will use another version for now.
-Paul
Ingo Michalak
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Sep 23, 2014, 10:07:03 AM9/23/14
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Hey together,
I want to add, that the same happens for my setup: Ubuntu laptop, AVX.PTHREADS version, normal ("-f a") analyses. Older version (8.0.26) works. Full error message:
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dear paul and ingo,
could you send me the input datasets that generate this error please?
thanks,
alexis
--
Alexandros (Alexis) Stamatakis
Research Group Leader, Heidelberg Institute for Theoretical Studies
Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology
Adjunct Professor, Dept. of Ecology and Evolutionary Biology, University
of Arizona at Tucson
Time for BS model parameter optimization 11.140697 raxmlHPC-PTHREADS: evaluateGenericSpecial.c:3433: evaluateIterative: Assertion `partitionLikelihood < 0.0' failed. Aborted (core dumped)
Strangely, when I use -m GTRCAT this error does not occur.
Thanks, Christian
Alexandros Stamatakis
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Nov 13, 2014, 9:00:33 AM11/13/14
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Dear All,
Thanks for reporting, I have a good idea where the error might come
from, but I am completely overloaded right now, i.e., no time to write
code, just use release v8.0.26 that will work (hopefully).
I'll let you know once this is fixed.
Alexis
Alexandros Stamatakis
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Nov 17, 2014, 5:14:44 AM11/17/14
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> >>
> >
>
> --
> Alexandros (Alexis) Stamatakis
>
> Research Group Leader, Heidelberg Institute for Theoretical Studies
> Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology
> Adjunct Professor, Dept. of Ecology and Evolutionary Biology,
> University
> of Arizona at Tucson
>