morphological/molecular matrix

[Roberta graboski mendes]

Hi all, 

I have a doubt about how to set model in RAxML using a total evidence matrix.

I have a matrix with 390 gene partition and one partition is for morphological characters

For example my partition is:

DNA, Subset1 = 1-200

MULTI, morph = 201=500

I would like to know how to set MK model for morphological partition and GTRGAMMA for my molecular partition.

So, should I use the command -m MULTIGAMMA -K MK? When I set this model, automatically will set GTR GAMMA for my molecular partition and Mk for morphological?

Thank you!

Roberta

[Alexey Kozlov]

Hi Roberta,

yes, you can use either "-m MULTIGAMMA -K MK" or "-m GTRGAMMA -K MK" with your partition file, RAxML will automatically
choose the correct model based on each partition's data type.

Best,
Alexey

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[Roberta graboski mendes]

Thanks Alexey!