Bootstrap

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Mehdi

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Apr 14, 2015, 11:12:33 AM4/14/15
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Dear all
Thanks a lot. Now I get familiar with RAxML. I want to conduct an analysis with bootstrap and the software does it for me but I do not know why when I open the result which is named RAxML_bootstrap.test, there is not any bootstrap number on the clades.
This is the command that I write:
"C:\Users\M\Desktop\32-Bit\raxmlHPC_820_32.exe" -b 100 -N 100 -m GTRGAMMAI -p 12345 -n test -s C:\Users\M\Desktop\32-Bit\coi1cytb.phy
The analysis ends without any error. How can I get bootstrap numbers?
Thanks for your prompt attention

Alexandros Stamatakis

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Apr 14, 2015, 1:11:08 PM4/14/15
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On 14.04.2015 17:12, Mehdi wrote:
> Dear all
> Thanks a lot. Now I get familiar with RAxML. I want to conduct an
> analysis with bootstrap and the software does it for me but I do not
> know why when I open the result which is named *RAxML_bootstrap.test*,
> there is not any bootstrap number on the clades.

of course not the file contains the bootstrap trees

> This is the command that I write:
> *"C:\Users\M\Desktop\32-Bit\raxmlHPC_820_32.exe" -b 100 -N 100 -m
> GTRGAMMAI -p 12345 -n test -s C:\Users\M\Desktop\32-Bit\coi1cytb.phy*
> The analysis ends without any error. How can I get bootstrap numbers?
> Thanks for your prompt attention

I already kindly asked you to read the step by step manual at:

http://sco.h-its.org/exelixis/web/software/raxml/hands_on.html

please see under step 4.

thank you,

alexis

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--
Alexandros (Alexis) Stamatakis

Research Group Leader, Heidelberg Institute for Theoretical Studies
Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology
Adjunct Professor, Dept. of Ecology and Evolutionary Biology, University
of Arizona at Tucson

www.exelixis-lab.org
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