On 14.04.2015 17:12, Mehdi wrote:
> Dear all
> Thanks a lot. Now I get familiar with RAxML. I want to conduct an
> analysis with bootstrap and the software does it for me but I do not
> know why when I open the result which is named *RAxML_bootstrap.test*,
> there is not any bootstrap number on the clades.
of course not the file contains the bootstrap trees
> This is the command that I write:
> *"C:\Users\M\Desktop\32-Bit\raxmlHPC_820_32.exe" -b 100 -N 100 -m
> GTRGAMMAI -p 12345 -n test -s C:\Users\M\Desktop\32-Bit\coi1cytb.phy*
> The analysis ends without any error. How can I get bootstrap numbers?
> Thanks for your prompt attention
I already kindly asked you to read the step by step manual at:
http://sco.h-its.org/exelixis/web/software/raxml/hands_on.html
please see under step 4.
thank you,
alexis
>
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--
Alexandros (Alexis) Stamatakis
Research Group Leader, Heidelberg Institute for Theoretical Studies
Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology
Adjunct Professor, Dept. of Ecology and Evolutionary Biology, University
of Arizona at Tucson
www.exelixis-lab.org