Error when running bootstraps in RAxML v 8.1.18

[Tasha Koch]

Dear Alexis

The RAxML PTHREADS version has recently been updated on the university server that I have been using to run my analyses. 

I tried to re-run an analysis that had worked using the previous version. I've kept all the parameters (and the input file) the same, only increased my bootstraps to 1000. 

The commands I used for the time that it worked was:

/opt/exp_soft/RAxML-8.1.18/raxmlHPC-PTHREADS -T 3 -f a -m GTRCAT -p 12345 -x 12345 -# 100 -s allstrainsSNPsALIGNclus.fa -o K116_SRX002429.all.raw.vcf.short.var -n TB182_SG_ROOT_CLUS

When I tried a little earlier to increase the bootstrap by running:

/opt/exp_soft/RAxML-8.1.18/raxmlHPC-PTHREADS -T 3 -f a -m GTRCAT -p 12345 -x 12345 -# 1000 -s allstrainsSNPsALIGNclus.fa -o K116_SRX002429.all.raw.vcf.short.var -n TB182_SG_ROOT_CLUS_1000

I get the following error:

raxmlHPC-PTHREADS: axml.c:2496: sitecombcrunch: Assertion `p >= 0 && p < cdta->endsite' failed.

The same error occurs when I try to run the older command. 

Do you think it could be a bug in the updated version?

Many thanks

Anastasia

[William Gearty]

This bug has been addressed in version 8.1.20.

--
You received this message because you are subscribed to the Google Groups "raxml" group.
To unsubscribe from this group and stop receiving emails from it, send an email to raxml+un...@googlegroups.com.
For more options, visit https://groups.google.com/d/optout.

--

William Gearty

PhD Student, Paleobiology

Department of Geological Sciences

Stanford School of Earth, Energy & Environmental Sciences

people.stanford.edu/wgearty

[Tasha Koch]

Thank you! 

Sent from my iPhone.

You received this message because you are subscribed to a topic in the Google Groups "raxml" group.
To unsubscribe from this topic, visit https://groups.google.com/d/topic/raxml/IqNRet-S2yU/unsubscribe.
To unsubscribe from this group and all its topics, send an email to raxml+un...@googlegroups.com.