RAxML-NG - rapid Bootstrap analysis

[Antony Vincent]

Hi !

Is it possible to perform rapid Bootstrap analysis in RAxML-NG (-f a in RAxML) instead of non-parametric bootstrapping?

Thank you

[Alexey Kozlov]

Hi Antony,

> Is it possible to perform rapid Bootstrap analysis in RAxML-NG (-f a in RAxML) instead of non-parametric bootstrapping?

no, rapid bootstrapping is not implemented in RAxML-NG.

Best,
Alexey

[Antony Vincent]

Thank you.

Is there a reason? Are you planning to do it?

[Alexey Kozlov]

If I recall it correctly, there were some doubts that rapid bootstrapping is as reliable as the slow/classical one. We
do plan to implement a faster bootstrapping heuristic in RAxML-NG, but most likely it will be different from rapid
bootstrapping.in RAxML.

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