Hi Santiago,
For CIPRES, the name of the ascertainment bias file will be set by the interface, and you have no control over it.
In your case, I believe asc~p1.txt will work.
Check your output, and look for the bias file. It will be named p1.txt or something like that. Make sure your partition file calls for that file name.
You can contact me here, or directly if that doesn’t make sense.
Mark
You have to use the newer raxml interface, raxmlhpc8_xsede
Look for this prompt:
Choose Ascertainment bias correction file 1 (will be named p1.txt)
The earlier interface does not have the option to upload the required file.
Mark
Hi Santiago,
After we looked at this together, I figured out the issue.
You have to use the newer raxml interface, raxmlhpc8_xsede
Look for this prompt:
Choose Ascertainment bias correction file 1 (will be named p1.txt)
The earlier interface does not have the option to upload the required file.
Mark
On Friday, December 29, 2017 at 9:52:12 AM UTC-8, Santiago Ceballos wrote:
Hi Mark,
thanks a lot for your quick reply. Unfortunately it didn't work, I still have the same problem. I used:
part.txt:
[asc~p1.txt], ASC_DNA, p1=1-8527
p1.txt:
273400
Santiago
El viernes, 29 de diciembre de 2017, 11:04:15 (UTC-6), Mark Miller escribió:
Hi Santiago,
For CIPRES, the name of the ascertainment bias file will be set by the interface, and you have no control over it.
In your case, I believe asc~p1.txt will work.
Check your output, and look for the bias file. It will be named p1.txt or something like that. Make sure your partition file calls for that file name.
You can contact me here, or directly if that doesn’t make sense.
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